Role of DNA methylation in the regulation of transcription.

DNA methylation plays an important role in the regulation of gene expression during development. Methyl moieties at CpG residues suppress transcription by affecting DNA-protein interactions, thus altering the accessibility of genes to trans-acting factors in the cell. Because it works in cis, this mechanism is important in the control of X inactivation and genomic imprinting.

[1]  H. Cedar,et al.  Active gene sequences are undermethylated. , 1981, Proceedings of the National Academy of Sciences of the United States of America.

[2]  P. Hagerman,et al.  Cytosine methylation can induce local distortions in the structure of duplex DNA. , 1992, Biochemistry.

[3]  J. Ngernprasirtsiri,et al.  Transcriptional regulation and DNA methylation in plastids during transitional conversion of chloroplasts to chromoplasts. , 1990, The EMBO journal.

[4]  J. Locker,et al.  Developmental changes in the methylation of the rat albumin and alpha‐fetoprotein genes. , 1983, The EMBO journal.

[5]  G. Prendergast,et al.  Association of Myn, the murine homolog of Max, with c-Myc stimulates methylation-sensitive DNA binding and ras cotransformation , 1991, Cell.

[6]  Adrian Bird,et al.  Alternative chromatin structure at CpG islands , 1990, Cell.

[7]  M. Ehrlich,et al.  Highly repeated sites in the apolipoprotein(a) gene recognized by methylated DNA-binding protein, a sequence-specific DNA-binding protein , 1990, Molecular and cellular biology.

[8]  J. P. Thompson,et al.  Trans-activation of a methylated adenovirus promoter by a frog virus 3 protein. , 1986, Proceedings of the National Academy of Sciences of the United States of America.

[9]  R. Liskay,et al.  Inactive X chromosome DNA does not function in DNA-mediated cell transformation for the hypoxanthine phosphoribosyltransferase gene. , 1980, Proceedings of the National Academy of Sciences of the United States of America.

[10]  H. Cedar,et al.  B cell-specific demethylation: A novel role for the intronic κ chain enhancer sequence , 1994, Cell.

[11]  A. Razin,et al.  The ontogeny of allele‐specific methylation associated with imprinted genes in the mouse. , 1993, The EMBO journal.

[12]  D. Bednarik,et al.  Inactivation of the HIV LTR by DNA CpG methylation: evidence for a role in latency. , 1990, The EMBO journal.

[13]  Peter A. Jones Gene Activation by 5-Azacytidine , 1984 .

[14]  Peter B. Becker,et al.  Genomic footprinting reveals cell type-specific DNA binding of ubiquitous factors , 1987, Cell.

[15]  V. Chapman,et al.  Use of a HpaII-polymerase chain reaction assay to study DNA methylation in the Pgk-1 CpG island of mouse embryos at the time of X-chromosome inactivation , 1990, Molecular and cellular biology.

[16]  H. Cedar,et al.  Effect of regional DNA methylation on gene expression. , 1985, Proceedings of the National Academy of Sciences of the United States of America.

[17]  A. Razin,et al.  Histone H1-mediated inhibition of transcription initiation of methylated templates in vitro. , 1993, The Journal of biological chemistry.

[18]  Z. Paroush,et al.  Dynamics of demethylation and activation of the α-actin gene in myoblasts , 1990, Cell.

[19]  M. Szyf,et al.  Methylation of replicating and post-replicated mouse L-cell DNA. , 1983, Proceedings of the National Academy of Sciences of the United States of America.

[20]  J. Hurst,et al.  DNA methylation and the regulation of globin gene expression , 1983, Cell.

[21]  J. Hofsteenge,et al.  The repressor MDBP-2 is a member of the histone H1 family that binds preferentially in vitro and in vivo to methylated nonspecific DNA sequences. , 1992, Proceedings of the National Academy of Sciences of the United States of America.

[22]  A. Bird,et al.  Repression of genes by DNA methylation depends on CpG density and promoter strength: evidence for involvement of a methyl‐CpG binding protein. , 1992, The EMBO journal.

[23]  D. S. Gross,et al.  5-methylcytosine is localized in nucleosomes that contain histone H1. , 1983, Proceedings of the National Academy of Sciences of the United States of America.

[24]  T. Klimkait,et al.  Reactivation of the methylation-inactivated late E2A promoter of adenovirus type 2 by E1A (13 S) functions. , 1988, Journal of molecular biology.

[25]  D. Renz,et al.  DNA methylation of three 5' C-C-G-G 3' sites in the promoter and 5' region inactivate the E2a gene of adenovirus type 2. , 1984, Proceedings of the National Academy of Sciences of the United States of America.

[26]  T. Mohandas,et al.  Reactivation of an inactive human X chromosome: evidence for X inactivation by DNA methylation. , 1981, Science.

[27]  J. Jiricny,et al.  Genomic sequencing reveals a positive correlation between the kinetics of strand-specific DNA demethylation of the overlapping estradiol/glucocorticoid-receptor binding sites and the rate of avian vitellogenin mRNA synthesis. , 1986, Proceedings of the National Academy of Sciences of the United States of America.

[28]  D. Barlow,et al.  Maternal-specific methylation of the imprinted mouse Igf2r locus identifies the expressed locus as carrying the imprinting signal , 1993, Cell.

[29]  Robert L. Tanguay,et al.  In vivo footprint and methylation analysis by PCR-aided genomic sequencing: comparison of active and inactive X chromosomal DNA at the CpG island and promoter of human PGK-1. , 1990, Genes & development.

[30]  G. Martin,et al.  Methylation of the Hprt gene on the inactive X occurs after chromosome inactivation , 1987, Cell.

[31]  H. Cedar,et al.  Organization of 5-methylcytosine in chromosomal DNA. , 1978, Biochemistry.

[32]  Rudolf Jaenisch,et al.  Targeted mutation of the DNA methyltransferase gene results in embryonic lethality , 1992, Cell.

[33]  M. Behe,et al.  Effects of methylation on a synthetic polynucleotide: the B--Z transition in poly(dG-m5dC).poly(dG-m5dC). , 1981, Proceedings of the National Academy of Sciences of the United States of America.

[34]  N. Benvenisty,et al.  Sequential changes in DNA methylation patterns of the rat phosphoenolpyruvate carboxykinase gene during development. , 1985, Proceedings of the National Academy of Sciences of the United States of America.

[35]  W. Schaffner,et al.  Sp1 transcription factor binds DNA and activates transcription even when the binding site is CpG methylated. , 1988, Genes & development.

[36]  A. Razin,et al.  Developmental pattern of gene-specific DNA methylation in the mouse embryo and germ line. , 1992, Genes & development.

[37]  S. Lehnert,et al.  Temporal and regional changes in DNA methylation in the embryonic, extraembryonic and germ cell lineages during mouse embryo development. , 1987, Development.

[38]  Adrian Bird,et al.  DNA methylation inhibits transcription indirectly via a methyl-CpG binding protein , 1991, Cell.

[39]  M. Comb,et al.  CpG methylation inhibits proenkephalin gene expression and binding of the transcription factor AP-2 , 1990, Nucleic Acids Res..

[40]  C. Chae,et al.  DNA hypomethylation and germ cell-specific expression of testis-specific H2B histone gene. , 1991, The Journal of biological chemistry.

[41]  W Zacharias,et al.  Methylation of cytosine influences the DNA structure. , 1993, EXS.

[42]  A. Bird,et al.  Purification, sequence, and cellular localization of a novel chromosomal protein that binds to Methylated DNA , 1992, Cell.

[43]  D. Kaiser,et al.  Epigenetic mechanisms underlying the imprinting of the mouse H19 gene. , 1993, Genes & development.

[44]  H. Cedar,et al.  Muscle-specific activation of a methylated chimeric actin gene , 1986, Cell.

[45]  M. Azim Surani,et al.  Parental-origin-specific epigenetic modification of the mouse H19 gene , 1993, Nature.

[46]  J. Jost,et al.  Estrogen induces a demethylation at the 5' end region of the chicken vitellogenin gene. , 1982, Proceedings of the National Academy of Sciences of the United States of America.

[47]  A. Graessmann,et al.  Chromatin structure is required to block transcription of the methylated herpes simplex virus thymidine kinase gene. , 1987, Proceedings of the National Academy of Sciences of the United States of America.

[48]  Howard Cedar,et al.  DNA methylation affects the formation of active chromatin , 1986, Cell.

[49]  A. Wolffe,et al.  Dominant and specific repression of Xenopus oocyte 5S RNA genes and satellite I DNA by histone H1. , 1989, The EMBO journal.

[50]  Mark Groudine,et al.  Propagation of globin DNAase i-hypersensitive sites in absence of factors required for induction: A possible mechanism for determination , 1982, Cell.

[51]  Rudolf Jaenisch,et al.  Role for DNA methylation in genomic imprinting , 1993, Nature.

[52]  A. Razin,et al.  DNA methylation and gene expression , 1991, Microbiological reviews.

[53]  L. M. Lira,et al.  Sequence-specific antirepression of histone H1-mediated inhibition of basal RNA polymerase II transcription. , 1991, Science.

[54]  S. Kochanek,et al.  Adenovirus type 2 VAI RNA transcription by polymerase III is blocked by sequence-specific methylation , 1991, Journal of virology.

[55]  J. Benhattar,et al.  Cytosine methylation in CTF and Sp1 recognition sites of an HSV tk promoter: effects on transcription in vivo and on factor binding in vitro. , 1989, Nucleic acids research.

[56]  Falk Weih,et al.  Analysis of CpG methylation and genomic footprinting at the tyrosine aminotransferase gene: DNA methylation alone is not sufficient to prevent protein binding in vivo. , 1991, The EMBO journal.

[57]  C. Duckett,et al.  DNA CpG methylation inhibits binding of NF-kappa B proteins to the HIV-1 long terminal repeat cognate DNA motifs. , 1991, The New biologist.

[58]  J. Nevins,et al.  Role of an adenovirus E2 promoter binding factor in E1A-mediated coordinate gene control. , 1987, Proceedings of the National Academy of Sciences of the United States of America.