Complete genome sequence of a novel member of the family Potyviridae isolated from Phellodendron amurense Rupr. in Liaoning, China

[1]  J. López-Moya,et al.  The HCPro from the Potyviridae family: an enviable multitasking Helper Component that every virus would like to have. , 2018, Molecular plant pathology.

[2]  A. von Haeseler,et al.  UFBoot2: Improving the Ultrafast Bootstrap Approximation , 2017, bioRxiv.

[3]  Thomas K. F. Wong,et al.  ModelFinder: Fast Model Selection for Accurate Phylogenetic Estimates , 2017, Nature Methods.

[4]  Bo Yu,et al.  CDD/SPARCLE: functional classification of proteins via subfamily domain architectures , 2016, Nucleic Acids Res..

[5]  Sudhir Kumar,et al.  MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets. , 2016, Molecular biology and evolution.

[6]  A. von Haeseler,et al.  IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies , 2014, Molecular biology and evolution.

[7]  D. Mollov,et al.  Complete nucleotide sequence of rose yellow mosaic virus, a novel member of the family Potyviridae , 2013, Archives of Virology.

[8]  R.-H. Wen,et al.  Mutational analysis of the putative pipo of soybean mosaic virus suggests disruption of PIPO protein impedes movement. , 2010, Virology.

[9]  O. Gascuel,et al.  New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. , 2010, Systematic biology.

[10]  E. Birney,et al.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs. , 2008, Genome research.

[11]  Mark Johnson,et al.  NCBI BLAST: a better web interface , 2008, Nucleic Acids Res..

[12]  Gerard Talavera,et al.  Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments. , 2007, Systematic biology.

[13]  F. Beaudoin,et al.  Overview and analysis of the polyprotein cleavage sites in the family Potyviridae. , 2005, Molecular plant pathology.

[14]  L. Velasco,et al.  Absence of a coding region for the helper component-proteinase in the genome of cucumber vein yellowing virus, a whitefly-transmitted member of the Potyviridae , 2005, Archives of Virology.

[15]  Zhang Weidong,et al.  ISSR analysis on genetic diversity in natural populations of rare and endangered species Phellodendron amurense , 2016 .

[16]  Zhi Yan.  Genetic diversity in wild populations of Phellodendron amurense, a rare and endangered medicinal plant, detected by AFLP , 2006 .

[17]  J. Maniloff,et al.  Virus taxonomy : eighth report of the International Committee on Taxonomy of Viruses , 2005 .