Long versus short oligonucleotide microarrays for the study of gene expression in nonhuman primates

[1]  G. Sherlock Of fish and chips , 2005, Nature Methods.

[2]  Bryan Frank,et al.  Independence and reproducibility across microarray platforms , 2005, Nature Methods.

[3]  S. Enkemann,et al.  A sequence-based identification of the genes detected by probesets on the Affymetrix U133 plus 2.0 array , 2005, Nucleic acids research.

[4]  B. Jordan How consistent are expression chip platforms? , 2004, BioEssays : news and reviews in molecular, cellular and developmental biology.

[5]  Zhining Wang,et al.  Identification and utilization of inter-species conserved (ISC) probesets on Affymetrix human GeneChip® platforms for the optimization of the assessment of expression patterns in non human primate (NHP) samples , 2004, BMC Bioinformatics.

[6]  Eliot Marshall,et al.  Getting the Noise Out of Gene Arrays , 2004, Science.

[7]  Andrew L. Lemire,et al.  Comparison of microarray-based mRNA profiling technologies for identification of psychiatric disease and drug signatures , 2004, Journal of Neuroscience Methods.

[8]  J. Solnick,et al.  Gastric Transcription Profile of Helicobacter pylori Infection in the Rhesus Macaque , 2004, Infection and Immunity.

[9]  J. D. Porter,et al.  Genome-wide transcriptional profiles are consistent with functional specialization of the extraocular muscle layers. , 2004, Investigative ophthalmology & visual science.

[10]  Zoltan Szallasi,et al.  Increased measurement accuracy for sequence-verified microarray probes. , 2004, Physiological genomics.

[11]  Z. Szallasi,et al.  Sequence-matched probes produce increased cross-platform consistency and more reproducible biological results in microarray-based gene expression measurements. , 2004, Nucleic acids research.

[12]  Wenbo Xu,et al.  Sister grouping of chimpanzees and humans as revealed by genome-wide phylogenetic analysis of brain gene expression profiles. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[13]  A. Chaudhuri,et al.  Microarray analysis of developmental plasticity in monkey primary visual cortex , 2004, Journal of neurochemistry.

[14]  Paul S Haber,et al.  Gene expression profiling of alcoholic liver disease in the baboon (Papio hamadryas) and human liver. , 2003, The American journal of pathology.

[15]  M. Akimoto,et al.  Gene microarray analysis of experimental glaucomatous retina from cynomologous monkey. , 2003, Investigative ophthalmology & visual science.

[16]  Kristina Hanspers,et al.  Spotted long oligonucleotide arrays for human gene expression analysis. , 2003, Genome research.

[17]  Derek E. Wildman,et al.  Implications of natural selection in shaping 99.4% nonsynonymous DNA identity between humans and chimpanzees: Enlarging genus Homo , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[18]  N. Iizuka,et al.  Differential gene expression in distinct virologic types of hepatocellular carcinoma: association with liver cirrhosis , 2003, Oncogene.

[19]  E. Bézard,et al.  Microarray analysis of nonhuman primates: validation of experimental models in neurological disorders , 2003, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[20]  H. Fox,et al.  Analysis of result variability from high-density oligonucleotide arrays comparing same-species and cross-species hybridizations. , 2002, BioTechniques.

[21]  Thomas D. Schmittgen,et al.  Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. , 2001, Methods.

[22]  Jason E. Stewart,et al.  Minimum information about a microarray experiment (MIAME)—toward standards for microarray data , 2001, Nature Genetics.

[23]  J. Hacia,et al.  Genome of the apes. , 2001, Trends in genetics : TIG.

[24]  M. Nader,et al.  Induction and maintenance of ethanol self-administration in cynomolgus monkeys (Macaca fascicularis): long-term characterization of sex and individual differences. , 2001, Alcoholism, clinical and experimental research.

[25]  R. Lanford,et al.  DNA Microarray Analysis of Chimpanzee Liver during Acute Resolving Hepatitis C Virus Infection , 2001, Journal of Virology.

[26]  M. Nader,et al.  Chronic cocaine‐mediated changes in non‐human primate nucleus accumbens gene expression , 2001, Journal of neurochemistry.

[27]  C. Li,et al.  Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection. , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[28]  Ronald W. Davis,et al.  Quantitative Monitoring of Gene Expression Patterns with a Complementary DNA Microarray , 1995, Science.

[29]  J. Eberwine,et al.  Amplified RNA synthesized from limited quantities of heterogeneous cDNA. , 1990, Proceedings of the National Academy of Sciences of the United States of America.

[30]  P. Chomczyński,et al.  Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. , 1987, Analytical biochemistry.

[31]  BMC Bioinformatics Methodology article Alternative mapping of probes to genes for Affymetrix chips , 2004 .