The RNA helicase Dhx15 mediates Wnt-induced antimicrobial protein expression in Paneth cells

Significance RNA helicases play critical roles in multiple biological processes. However, little in vivo data are available because of the lethality of mice completely deficient in RNA helicases. Here, we generate mice with conditional knockout of DEAD-box Helicase 15 (Dhx15) in the intestine, in which we found a specific defect in antimicrobial peptide (AMP) α-defensins in Paneth cells. Additionally, we found that Dhx15-specific depletion in the intestine leads to susceptibility to enteric bacterial infection as well as dextran sulfate sodium-induced colitis in mice. In humans, we also found reduced protein levels of Dhx15 in ulcerative colitis patients. RNA helicases play roles in various essential biological processes such as RNA splicing and editing. Recent in vitro studies show that RNA helicases are involved in immune responses toward viruses, serving as viral RNA sensors or immune signaling adaptors. However, there is still a lack of in vivo data to support the tissue- or cell-specific function of RNA helicases owing to the lethality of mice with complete knockout of RNA helicases; further, there is a lack of evidence about the antibacterial role of helicases. Here, we investigated the in vivo role of Dhx15 in intestinal antibacterial responses by generating mice that were intestinal epithelial cell (IEC)-specific deficient for Dhx15 (Dhx15 f/f Villin1-cre, Dhx15ΔIEC). These mice are susceptible to infection with enteric bacteria Citrobacter rodentium (C. rod), owing to impaired α-defensin production by Paneth cells. Moreover, mice with Paneth cell-specific depletion of Dhx15 (Dhx15 f/f Defensinα6-cre, Dhx15ΔPaneth) are more susceptible to DSS (dextran sodium sulfate)-induced colitis, which phenocopy Dhx15ΔIEC mice, due to the dysbiosis of the intestinal microbiota. In humans, reduced protein levels of Dhx15 are found in ulcerative colitis (UC) patients. Taken together, our findings identify a key regulator of Wnt-induced α-defensins in Paneth cells and offer insights into its role in the antimicrobial response as well as intestinal inflammation.

[1]  Runzhi Li,et al.  NLRP6 inflammasome. , 2020, Molecular aspects of medicine.

[2]  S. V. King,et al.  DDX3X acts as a live-or-die checkpoint in stressed cells by regulating NLRP3 inflammasome , 2019, Nature.

[3]  Lavanya Moparthi,et al.  Wnt signaling in intestinal inflammation. , 2019, Differentiation; research in biological diversity.

[4]  M. Gale,et al.  DHX15 Is a Coreceptor for RLR Signaling That Promotes Antiviral Defense Against RNA Virus Infection. , 2019, Journal of interferon & cytokine research : the official journal of the International Society for Interferon and Cytokine Research.

[5]  Kai Huang,et al.  Cis-Acting circ-CTNNB1 Promotes β-Catenin Signaling and Cancer Progression via DDX3-Mediated Transactivation of YY1. , 2018, Cancer research.

[6]  Yanchun Chen,et al.  DEAD-Box Helicase 5 Interacts With Transcription Factor 12 and Promotes the Progression of Osteosarcoma by Stimulating Cell Cycle Progression , 2019, Front. Pharmacol..

[7]  K. Bennett,et al.  The RNA helicase DDX3X is an essential mediator of innate antimicrobial immunity , 2018, PLoS pathogens.

[8]  P. Wei,et al.  The lncRNA NEAT1 activates Wnt/β-catenin signaling and promotes colorectal cancer progression via interacting with DDX5 , 2018, Journal of Hematology & Oncology.

[9]  A. Dillin,et al.  The Mitochondrial Unfolded Protein Response Is Mediated Cell-Non-autonomously by Retromer-Dependent Wnt Signaling , 2018, Cell.

[10]  Xiao-li Liu,et al.  ETS1 and SP1 drive DHX15 expression in acute lymphoblastic leukaemia , 2018, Journal of cellular and molecular medicine.

[11]  J. Nelson,et al.  DHX15 promotes prostate cancer progression by stimulating Siah2-mediated ubiquitination of androgen receptor , 2017, Oncogene.

[12]  J. Wehkamp,et al.  In the Wnt of Paneth Cells: Immune-Epithelial Crosstalk in Small Intestinal Crohn’s Disease , 2017, Front. Immunol..

[13]  Sumiko Watanabe,et al.  RNA helicase DHX15 acts as a tumour suppressor in glioma , 2017, British Journal of Cancer.

[14]  M. Washington,et al.  Human alpha defensin 5 is a candidate biomarker to delineate inflammatory bowel disease , 2017, PloS one.

[15]  Y. Kluger,et al.  Nlrp9b inflammasome restricts rotavirus infection in intestinal epithelial cells , 2017, Nature.

[16]  R. Nusse,et al.  Wnt/β-Catenin Signaling, Disease, and Emerging Therapeutic Modalities , 2017, Cell.

[17]  S. Sankaran-Walters,et al.  Guardians of the Gut: Enteric Defensins , 2017, Front. Microbiol..

[18]  H. Miyoshi Wnt-expressing cells in the intestines: guides for tissue remodeling , 2017, Journal of biochemistry.

[19]  F. You,et al.  Nlrp6 regulates intestinal antiviral innate immunity , 2015, Science.

[20]  J. Wehkamp,et al.  Crohn's disease-derived monocytes fail to induce Paneth cell defensins , 2015, Proceedings of the National Academy of Sciences.

[21]  L. Cope,et al.  Targeting DDX3 with a small molecule inhibitor for lung cancer therapy , 2015, EMBO molecular medicine.

[22]  M. Vatn,et al.  TCF-1-mediated Wnt signaling regulates Paneth cell innate immune defense effectors HD-5 and -6: implications for Crohn's disease. , 2014, American journal of physiology. Gastrointestinal and liver physiology.

[23]  Bin Yuan,et al.  DHX15 Senses Double-Stranded RNA in Myeloid Dendritic Cells , 2014, The Journal of Immunology.

[24]  H. Ichijo,et al.  The DEAH-Box RNA Helicase DHX15 Activates NF-κB and MAPK Signaling Downstream of MAVS During Antiviral Responses , 2014, Science Signaling.

[25]  G. Rasi,et al.  WNT-pathway components as predictive markers useful for diagnosis, prevention and therapy in inflammatory bowel disease and sporadic colorectal cancer , 2014, Oncotarget.

[26]  A. Kaser,et al.  Paneth cells as a site of origin for intestinal inflammation , 2013, Nature.

[27]  J. Wehkamp,et al.  Antimicrobial peptides and gut microbiota in homeostasis and pathology , 2013, EMBO molecular medicine.

[28]  C. Cruciat,et al.  RNA Helicase DDX3 Is a Regulatory Subunit of Casein Kinase 1 in Wnt–β-Catenin Signaling , 2013, Science.

[29]  H. Clevers,et al.  Paneth cells: maestros of the small intestinal crypts. , 2013, Annual review of physiology.

[30]  G. Yeretssian,et al.  Intestinal antimicrobial peptides during homeostasis, infection, and disease , 2012, Front. Immun..

[31]  B. Finlay,et al.  Bacterial Stimulation of the TLR-MyD88 Pathway Modulates the Homeostatic Expression of Ileal Paneth Cell α-Defensins , 2012, Journal of Innate Immunity.

[32]  A. Hecht,et al.  Intrinsic properties of Tcf1 and Tcf4 splice variants determine cell-type-specific Wnt/β-catenin target gene expression , 2012, Nucleic acids research.

[33]  D. Klostermeier,et al.  RNA helicases in infection and disease , 2012, RNA biology.

[34]  Kristian Cibulskis,et al.  Genomic sequencing of colorectal adenocarcinomas identifies a recurrent VTI1A-TCF7L2 fusion , 2011, Nature Genetics.

[35]  H. Clevers,et al.  Wnt signaling, lgr5, and stem cells in the intestine and skin. , 2009, The American journal of pathology.

[36]  Sarah L. Brown,et al.  A key role for autophagy and the autophagy gene Atg16l1 in mouse and human intestinal Paneth cells , 2008, Nature.

[37]  Chen Liang,et al.  The requirement of the DEAD-box protein DDX24 for the packaging of human immunodeficiency virus type 1 RNA. , 2008, Virology.

[38]  Ankita Patel,et al.  Mutations in X-linked PORCN, a putative regulator of Wnt signaling, cause focal dermal hypoplasia , 2007, Nature Genetics.

[39]  H. Clevers,et al.  The Paneth cell alpha-defensin deficiency of ileal Crohn's disease is linked to Wnt/Tcf-4. , 2007, Journal of immunology.

[40]  D. Frick,et al.  The hepatitis C virus NS3 protein: a model RNA helicase and potential drug target. , 2007, Current issues in molecular biology.

[41]  Hans Clevers,et al.  Expression pattern of Wnt signaling components in the adult intestine. , 2005, Gastroenterology.

[42]  H. Clevers,et al.  Wnt signalling induces maturation of Paneth cells in intestinal crypts , 2005, Nature Cell Biology.

[43]  M. Weichenthal,et al.  Reduced Paneth cell alpha-defensins in ileal Crohn's disease. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[44]  S. Zeichner,et al.  Alterations in the expression of DEAD-box and other RNA binding proteins during HIV-1 replication , 2004, Retrovirology.

[45]  Shizuo Akira,et al.  The RNA helicase RIG-I has an essential function in double-stranded RNA-induced innate antiviral responses , 2004, Nature Immunology.

[46]  T. Ganz,et al.  Paneth cell trypsin is the processing enzyme for human defensin-5 , 2002, Nature Immunology.