High-frequency, precise modification of the tomato genome

[1]  Feng Zhang,et al.  Improving cold storage and processing traits in potato through targeted gene knockout. , 2016, Plant biotechnology journal.

[2]  D. Voytas,et al.  High-frequency, precise modification of the tomato genome , 2015, Genome Biology.

[3]  De-Pei Liu,et al.  Both TALENs and CRISPR/Cas9 directly target the HBB IVS2–654 (C > T) mutation in β-thalassemia-derived iPSCs , 2015, Scientific Reports.

[4]  Pooja Chaudhari,et al.  Efficient and allele-specific genome editing of disease loci in human iPSCs. , 2015, Molecular therapy : the journal of the American Society of Gene Therapy.

[5]  D. Voytas,et al.  Enabling plant synthetic biology through genome engineering. , 2015, Trends in biotechnology.

[6]  S. Toki,et al.  Precision genome editing in plants via gene targeting and piggyBac-mediated marker excision , 2014, The Plant journal : for cell and molecular biology.

[7]  H. Puchta,et al.  The CRISPR/Cas system can be used as nuclease for in planta gene targeting and as paired nickases for directed mutagenesis in Arabidopsis resulting in heritable progeny. , 2014, The Plant journal : for cell and molecular biology.

[8]  Shengdi Hu,et al.  An Efficient Genotyping Method for Genome-modified Animals and Human Cells Generated with CRISPR/Cas9 System , 2014, Scientific Reports.

[9]  F. Zhang,et al.  Improved soybean oil quality by targeted mutagenesis of the fatty acid desaturase 2 gene family. , 2014, Plant biotechnology journal.

[10]  Yanpeng Wang,et al.  Simultaneous editing of three homoeoalleles in hexaploid bread wheat confers heritable resistance to powdery mildew , 2014, Nature Biotechnology.

[11]  H. Puchta,et al.  Both CRISPR/Cas-based nucleases and nickases can be used efficiently for genome engineering in Arabidopsis thaliana. , 2014, The Plant journal : for cell and molecular biology.

[12]  Joachim Schiemann,et al.  Precise plant breeding using new genome editing techniques: opportunities, safety and regulation in the EU. , 2014, The Plant journal : for cell and molecular biology.

[13]  Daniel F. Voytas,et al.  Precision Genome Engineering and Agriculture: Opportunities and Regulatory Challenges , 2014, PLoS biology.

[14]  Björn Usadel,et al.  Trimmomatic: a flexible trimmer for Illumina sequence data , 2014, Bioinform..

[15]  R. Jiao,et al.  Various applications of TALEN- and CRISPR/Cas9-mediated homologous recombination to modify the Drosophila genome , 2014, Biology Open.

[16]  D. Voytas,et al.  DNA Replicons for Plant Genome Engineering[W][OPEN] , 2014, Plant Cell.

[17]  D. Voytas,et al.  Targeted Mutagenesis of Arabidopsis thaliana Using Engineered TAL Effector Nucleases , 2013, G3: Genes, Genomes, Genetics.

[18]  Y. Sheng,et al.  ULtiMATE System for Rapid Assembly of Customized TAL Effectors , 2013, PloS one.

[19]  D. Jantz,et al.  Targeted molecular trait stacking in cotton through targeted double-strand break induction , 2013, Plant biotechnology journal.

[20]  Daniel F. Voytas,et al.  Transcription Activator-Like Effector Nucleases Enable Efficient Plant Genome Engineering1[W][OA] , 2012, Plant Physiology.

[21]  Volker Brendel,et al.  TAL Effector-Nucleotide Targeter (TALE-NT) 2.0: tools for TAL effector design and target prediction , 2012, Nucleic Acids Res..

[22]  M. Spalding,et al.  High-efficiency TALEN-based gene editing produces disease-resistant rice , 2012, Nature Biotechnology.

[23]  S. Lewin,et al.  A new way of measuring apoptosis by absolute quantitation of inter-nucleosomally fragmented genomic DNA , 2012, Nucleic acids research.

[24]  Shane S. Sturrock,et al.  Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data , 2012, Bioinform..

[25]  R. Sánchez-Fernández,et al.  In planta gene targeting , 2012, Proceedings of the National Academy of Sciences.

[26]  N. Wang,et al.  PL1 fusion gene: a novel visual selectable marker gene that confers tolerance to multiple abiotic stresses in transgenic tomato , 2012, Transgenic Research.

[27]  Li Wang,et al.  Erratum: Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting (Nucleic Acids Research (2011) 39 (e82) DOI: 10.1093/nar/gkr218) , 2011 .

[28]  Erin L. Doyle,et al.  Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting , 2011, Nucleic acids research.

[29]  M. Karaca,et al.  The MAGi DNA extraction method for fresh tissues and dry seeds , 2011 .

[30]  Thuy D Vo,et al.  Enhancing zinc-finger-nuclease activity with improved obligate heterodimeric architectures , 2011, Nature Methods.

[31]  Aaron R. Quinlan,et al.  BIOINFORMATICS APPLICATIONS NOTE , 2022 .

[32]  S. Mukherjee,et al.  A geminiviral amplicon (VA) derived from Tomato leaf curl virus (ToLCV) can replicate in a wide variety of plant species and also acts as a VIGS vector , 2009, Virology Journal.

[33]  Y. Doyon,et al.  Precise genome modification in the crop species Zea mays using zinc-finger nucleases , 2009, Nature.

[34]  D. G. Gibson,et al.  Enzymatic assembly of DNA molecules up to several hundred kilobases , 2009, Nature Methods.

[35]  Ronnie J Winfrey,et al.  High frequency modification of plant genes using engineered zinc finger nucleases , 2009, Nature.

[36]  P. Vain,et al.  The pCLEAN Dual Binary Vector System for Agrobacterium-Mediated Plant Transformation1[W] , 2007, Plant Physiology.

[37]  D. Martin,et al.  The complete nucleotide sequence of a mild strain of Bean yellow dwarf virus , 2007, Archives of Virology.

[38]  A. Walmsley,et al.  Tomato (Lycopersicum esculentum). , 2006, Methods in molecular biology.

[39]  D. R. Wagner,et al.  Activation Tagging in Tomato Identifies a Transcriptional Regulator of Anthocyanin Biosynthesis, Modification, and Transport Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.012963. , 2003, The Plant Cell Online.

[40]  C. Gutiérrez,et al.  Geminivirus DNA replication , 1999, Cellular and Molecular Life Sciences CMLS.

[41]  B. Dujon,et al.  Two different but related mechanisms are used in plants for the repair of genomic double-strand breaks by homologous recombination. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[42]  D. Bisaro,et al.  Replicational release of geminivirus genomes from tandemly repeated copies: evidence for rolling-circle replication of a plant viral DNA. , 1991, Proceedings of the National Academy of Sciences of the United States of America.