Crystal structure of the polysialic acid–degrading endosialidase of bacteriophage K1F

[1]  S. Crennell,et al.  Crystal structure of a bacterial sialidase (from Salmonella typhimurium LT2) shows the same fold as an influenza virus neuraminidase. , 1993, Proceedings of the National Academy of Sciences of the United States of America.

[2]  C. Merril,et al.  The prospect for bacteriophage therapy in Western medicine , 2003, Nature Reviews Drug Discovery.

[3]  D E McRee,et al.  XtalView/Xfit--A versatile program for manipulating atomic coordinates and electron density. , 1999, Journal of structural biology.

[4]  I. Feavers,et al.  Development of vaccines against meningococcal disease , 2002, The Lancet.

[5]  E Garman,et al.  Crystal structure of Vibrio cholerae neuraminidase reveals dual lectin-like domains in addition to the catalytic domain. , 1994, Structure.

[6]  Collaborative Computational,et al.  The CCP4 suite: programs for protein crystallography. , 1994, Acta crystallographica. Section D, Biological crystallography.

[7]  P. Colman,et al.  Three-dimensional structure of the neuraminidase of influenza virus A/Tokyo/3/67 at 2.2 A resolution. , 1991, Journal of molecular biology.

[8]  M. Chou,et al.  The crystal structure of an intramolecular trans-sialidase with a NeuAc alpha2-->3Gal specificity. , 1998, Structure.

[9]  Andrew G. Watts,et al.  Trypanosoma cruzi trans-sialidase operates through a covalent sialyl-enzyme intermediate: tyrosine is the catalytic nucleophile. , 2003, Journal of the American Chemical Society.

[10]  J. Finne,et al.  Differential activities of bacteriophage depolymerase on bacterial polysaccharide: binding is essential but degradation is inhibitory in phage infection of K1-defective Escherichia coli , 1992, Journal of bacteriology.

[11]  C. Merril,et al.  Bacteriophage K1-5 Encodes Two Different Tail Fiber Proteins, Allowing It To Infect and Replicate on both K1 and K5 Strains of Escherichia coli , 2001, Journal of Virology.

[12]  A Bairoch,et al.  Updating the sequence-based classification of glycosyl hydrolases. , 1996, The Biochemical journal.

[13]  M. Schachner,et al.  Glycans and neural cell interactions , 2004, Nature Reviews Neuroscience.

[14]  S. Kitazume,et al.  Detection, isolation, and characterization of oligo/poly(sialic acid) and oligo/poly(deaminoneuraminic acid) units in glycoconjugates. , 1992, Analytical biochemistry.

[15]  K. Wilson,et al.  Efficient anisotropic refinement of macromolecular structures using FFT. , 1999, Acta crystallographica. Section D, Biological crystallography.

[16]  D. Bitter‐Suermann,et al.  Embryonic Neural Cell Adhesion Molecule in Cerebrospinal Fluid of Younger Children: Age‐Dependent Decrease During the First Year , 1990, Journal of neurochemistry.

[17]  A. J. Bennet,et al.  Mutagenesis of the conserved active-site tyrosine changes a retaining sialidase into an inverting sialidase. , 2003, Biochemistry.

[18]  S. Miller,et al.  Crystal structure of a heat and protease-stable part of the bacteriophage T4 short tail fibre. , 2001, Journal of molecular biology.

[19]  A. Varki,et al.  Intramolecular self-cleavage of polysialic acid. , 1994, The Journal of biological chemistry.

[20]  A. van Donkelaar,et al.  Refined atomic structures of N9 subtype influenza virus neuraminidase and escape mutants. , 1992, Journal of molecular biology.

[21]  T. Cheasty,et al.  Isolation of bacteriophages specific for the K1 polysaccharide antigen of Escherichia coli , 1977, Journal of clinical microbiology.

[22]  Chris Sander,et al.  Touring protein fold space with Dali/FSSP , 1998, Nucleic Acids Res..

[23]  S. Crennell,et al.  The three domains of a bacterial sialidase: a beta-propeller, an immunoglobulin module and a galactose-binding jelly-roll. , 1995, Structure.

[24]  J. Luzio,et al.  Prevention and Cure of Systemic Escherichia coli K1 Infection by Modification of the Bacterial Phenotype , 2004, Antimicrobial Agents and Chemotherapy.

[25]  S. Steinbacher,et al.  Crystal structure of P22 tailspike protein: interdigitated subunits in a thermostable trimer. , 1994, Science.

[26]  K. Timmis,et al.  NZB mouse system for production of monoclonal antibodies to weak bacterial antigens: isolation of an IgG antibody to the polysaccharide capsules of Escherichia coli K1 and group B meningococci. , 1985, Proceedings of the National Academy of Sciences of the United States of America.

[27]  H. Smith,et al.  Successful treatment of experimental Escherichia coli infections in mice using phage: its general superiority over antibiotics. , 1982, Journal of general microbiology.

[28]  K D Cowtan,et al.  Density modification for macromolecular phase improvement. , 1999, Progress in biophysics and molecular biology.

[29]  R. Gerardy-Schahn,et al.  Proteolytic Processing and Oligomerization of Bacteriophage-derived Endosialidases* , 2003, The Journal of Biological Chemistry.

[30]  B. Bassler,et al.  Purification and properties of a bacteriophage-induced endo-N-acetylneuraminidase specific for poly-alpha-2,8-sialosyl carbohydrate units. , 1987, The Journal of biological chemistry.

[31]  U. K. Laemmli,et al.  Cleavage of Structural Proteins during the Assembly of the Head of Bacteriophage T4 , 1970, Nature.

[32]  J. Zou,et al.  Improved methods for building protein models in electron density maps and the location of errors in these models. , 1991, Acta crystallographica. Section A, Foundations of crystallography.

[33]  J. Pelkonen,et al.  Common cleavage pattern of polysialic acid by bacteriophage endosialidases of different properties and origins , 1989, Journal of Virology.

[34]  T. Hahn.  International tables for crystallography , 2002 .

[35]  D. Figarella-Branger,et al.  A nude mice model of human rhabdomyosarcoma lung metastases for evaluating the role of polysialic acids in the metastatic process , 2001, Oncogene.

[36]  R. D. McCoy,et al.  Use of prokaryotic-derived probes to identify poly(sialic acid) in neonatal neuronal membranes. , 1984, Proceedings of the National Academy of Sciences of the United States of America.

[37]  Anastassis Perrakis,et al.  Automated protein model building combined with iterative structure refinement , 1999, Nature Structural Biology.

[38]  A. Frasch,et al.  Structural basis of sialyltransferase activity in trypanosomal sialidases. , 2000, The EMBO journal.

[39]  Pedro M Alzari,et al.  The crystal structure and mode of action of trans-sialidase, a key enzyme in Trypanosoma cruzi pathogenesis. , 2002, Molecular cell.

[40]  J. Luzio,et al.  Complete nucleotide sequence of the gene encoding bacteriophage E endosialidase: implications for K1E endosialidase structure and function. , 1995, The Biochemical journal.

[41]  T. Dermody,et al.  Mutations in type 3 reovirus that determine binding to sialic acid are contained in the fibrous tail domain of viral attachment protein sigma1 , 1997, Journal of virology.

[42]  S. Crennell,et al.  Crystal structure of the multifunctional paramyxovirus hemagglutinin-neuraminidase , 2001, Nature Structural Biology.

[43]  F. Lottspeich,et al.  Molecular cloning and functional expression of bacteriophage PK1E‐encoded endoneuraminidase Endo NE , 1995, Molecular microbiology.

[44]  S Cusack,et al.  The 2.2 A resolution crystal structure of influenza B neuraminidase and its complex with sialic acid. , 1992, The EMBO journal.

[45]  S. Iijima,et al.  Screening of Bacteriophages Producing Endo-N-Acetylneuraminidase , 1997 .

[46]  C. Whitfield,et al.  Protein synthesis is required for in vivo activation of polysialic acid capsule synthesis in Escherichia coli K1 , 1984, Journal of bacteriology.

[47]  G Taylor,et al.  Sialidases: structures, biological significance and therapeutic potential. , 1996, Current opinion in structural biology.

[48]  E. Vimr,et al.  Complete nucleotide sequence of the bacteriophage K1F tail gene encoding endo-N-acylneuraminidase (endo-N) and comparison to an endo-N homolog in bacteriophage PK1E , 1993, Journal of bacteriology.

[49]  Andrew G. Watts,et al.  Structural insights into the catalytic mechanism of Trypanosoma cruzi trans-sialidase. , 2004, Structure.

[50]  A. W. Schüttelkopf,et al.  PRODRG: a tool for high-throughput crystallography of protein-ligand complexes. , 2004, Acta crystallographica. Section D, Biological crystallography.

[51]  M. von Itzstein,et al.  Evidence for a sialosyl cation transition-state complex in the reaction of sialidase from influenza virus. , 1992, European journal of biochemistry.

[52]  S Thirup,et al.  Crystal Structure of the Ternary Complex of Phe-tRNAPhe, EF-Tu, and a GTP Analog , 1995, Science.

[53]  Fumio Arisaka,et al.  Structure of the cell-puncturing device of bacteriophage T4 , 2002, Nature.