Automated Genome Mining of Ribosomal Peptide Natural Products
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Nuno Bandeira | Pavel A. Pevzner | Mingxun Wang | Pieter C. Dorrestein | Hosein Mohimani | Ljiljana Pasa-Tolic | Samuel O. Purvine | Bradley S. Moore | P. Pevzner | P. Dorrestein | B. Moore | L. Paša-Tolić | S. Purvine | H. Brewer | Wei-Ting Liu | N. Bandeira | H. Mohimani | Mingxun Wang | R. Kersten | Heather M. Brewer | Wei-Ting Liu | Roland D. Kersten | Si Wu | Si Wu
[1] G. Sheldrick,et al. Labyrinthopeptins: a new class of carbacyclic lantibiotics. , 2010, Angewandte Chemie.
[2] Ronald J Moore,et al. Fully automated four-column capillary LC-MS system for maximizing throughput in proteomic analyses. , 2008, Analytical chemistry.
[3] Paul D. Cotter,et al. Identification of a Novel Two-Peptide Lantibiotic, Lichenicidin, following Rational Genome Mining for LanM Proteins , 2009, Applied and Environmental Microbiology.
[4] Pavel A. Pevzner,et al. Mutation-tolerant protein identification by mass-spectrometry , 2000, RECOMB '00.
[5] Pavel A. Pevzner,et al. A new approach to evaluating statistical significance of spectral identifications. , 2013, Journal of proteome research.
[6] Wu-chun Feng,et al. Missing genes in the annotation of prokaryotic genomes , 2010, BMC Bioinformatics.
[7] Ruedi Aebersold,et al. The pros and cons of peptide-centric proteomics , 2010, Nature Biotechnology.
[8] Pavel A. Pevzner,et al. Protein identification by spectral networks analysis , 2007, Proceedings of the National Academy of Sciences.
[9] P. Pevzner,et al. Spectral probabilities and generating functions of tandem mass spectra: a strike against decoy databases. , 2008, Journal of proteome research.
[10] Neil L. Kelleher,et al. Discovery and in vitro biosynthesis of haloduracin, a two-component lantibiotic , 2006, Proceedings of the National Academy of Sciences.
[11] R. Süssmuth,et al. Characterization of New Class III Lantibiotics—Erythreapeptin, Avermipeptin and Griseopeptin from Saccharopolyspora erythraea, Streptomyces avermitilis and Streptomyces griseus Demonstrates Stepwise N‐Terminal Leader Processing , 2012, Chembiochem : a European journal of chemical biology.
[12] Dekel Tsur,et al. Identification of post-translational modifications by blind search of mass spectra , 2005, Nature Biotechnology.
[13] C. Hertweck,et al. Genomics-inspired discovery of natural products. , 2011, Current opinion in chemical biology.
[14] Ronald J Moore,et al. Chemically etched open tubular and monolithic emitters for nanoelectrospray ionization mass spectrometry. , 2006, Analytical chemistry.
[15] M. Hudson,et al. The SapB morphogen is a lantibiotic-like peptide derived from the product of the developmental gene ramS in Streptomyces coelicolor. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[16] Hosein Mohimani,et al. Cycloquest: identification of cyclopeptides via database search of their mass spectra against genome databases. , 2011, Journal of proteome research.
[17] P. Pevzner,et al. Interpreting top-down mass spectra using spectral alignment. , 2008, Analytical chemistry.
[18] Teruhiko Beppu,et al. AmfS, an Extracellular Peptidic Morphogen in Streptomyces griseus , 2002, Journal of bacteriology.
[19] P. Pevzner,et al. PepNovo: de novo peptide sequencing via probabilistic network modeling. , 2005, Analytical chemistry.
[20] Nuno Bandeira,et al. MS/MS networking guided analysis of molecule and gene cluster families , 2013, Proceedings of the National Academy of Sciences.
[21] D. N. Perkins,et al. Probability‐based protein identification by searching sequence databases using mass spectrometry data , 1999, Electrophoresis.
[22] J. Yates,et al. An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database , 1994, Journal of the American Society for Mass Spectrometry.
[23] P. G. Arnison,et al. Ribosomally synthesized and post-translationally modified peptide natural products: overview and recommendations for a universal nomenclature. , 2013, Natural product reports.
[24] Oscar P. Kuipers,et al. BAGEL3: automated identification of genes encoding bacteriocins and (non-)bactericidal posttranslationally modified peptides , 2013, Nucleic Acids Res..
[25] Scott A. McLuckey,et al. The American Society for Mass Spectrometry , 1996 .
[26] R. Süssmuth,et al. Involvement and unusual substrate specificity of a prolyl oligopeptidase in class III lanthipeptide maturation. , 2013, Journal of the American Chemical Society.
[27] Kai Blin,et al. antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences , 2011, Nucleic Acids Res..
[28] Pieter C. Dorrestein,et al. A mass spectrometry-guided genome mining approach for natural product peptidogenomics , 2011, Nature chemical biology.
[29] G. Challis,et al. Strategies for the Discovery of New Natural Products by Genome Mining , 2009, Chembiochem : a European journal of chemical biology.
[30] Nuno Bandeira,et al. Mass spectral molecular networking of living microbial colonies , 2012, Proceedings of the National Academy of Sciences.
[31] Chris L. Tang,et al. Efficiency of database search for identification of mutated and modified proteins via mass spectrometry. , 2001, Genome research.
[32] W. A. van der Donk,et al. Genome mining for ribosomally synthesized natural products. , 2011, Current opinion in chemical biology.
[33] J. Willey,et al. Lantibiotics: peptides of diverse structure and function. , 2007, Annual review of microbiology.