Automatic and Reliable Leaf Disease Detection Using Deep Learning Techniques

Plants are a major source of food for the world population. Plant diseases contribute to production loss, which can be tackled with continuous monitoring. Manual plant disease monitoring is both laborious and error-prone. Early detection of plant diseases using computer vision and artificial intelligence (AI) can help to reduce the adverse effects of diseases and also overcome the shortcomings of continuous human monitoring. In this work, we propose the use of a deep learning architecture based on a recent convolutional neural network called EfficientNet on 18,161 plain and segmented tomato leaf images to classify tomato diseases. The performance of two segmentation models i.e., U-net and Modified U-net, for the segmentation of leaves is reported. The comparative performance of the models for binary classification (healthy and unhealthy leaves), six-class classification (healthy and various groups of diseased leaves), and ten-class classification (healthy and various types of unhealthy leaves) are also reported. The modified U-net segmentation model showed accuracy, IoU, and Dice score of 98.66%, 98.5%, and 98.73%, respectively, for the segmentation of leaf images. EfficientNet-B7 showed superior performance for the binary classification and six-class classification using segmented images with an accuracy of 99.95% and 99.12%, respectively. Finally, EfficientNet-B4 achieved an accuracy of 99.89% for ten-class classification using segmented images. It can be concluded that all the architectures performed better in classifying the diseases when trained with deeper networks on segmented images. The performance of each of the experimental studies reported in this work outperforms the existing literature.

[1]  Saad Kashem,et al.  Transfer Learning with Deep Convolutional Neural Network (CNN) for Pneumonia Detection using Chest X-ray , 2020, Applied Sciences.

[2]  Amith Khandakar,et al.  Machine Learning Based Photovoltaics (PV) Power Prediction Using Different Environmental Parameters of Qatar , 2019, Energies.

[3]  P. R. Scott,et al.  Plant disease: a threat to global food security. , 2005, Annual review of phytopathology.

[4]  P. Stoffella,et al.  Control of target spot of tomato with fungicides, systemic acquired resistance activators, and a biocontrol agent , 2018 .

[5]  S. Miller,et al.  Field Control of Bacterial Spot and Bacterial Speck of Tomato Using a Plant Activator. , 2001, Plant disease.

[6]  Yu Sun,et al.  Automatic Image-Based Plant Disease Severity Estimation Using Deep Learning , 2017, Comput. Intell. Neurosci..

[7]  A. Café-Filho,et al.  Septoria leaf spot in organic tomatoes under diverse irrigation systems and water management strategies , 2013 .

[8]  W. Cho,et al.  Identification of Viruses and Viroids Infecting Tomato and Pepper Plants in Vietnam by Metatranscriptomics , 2020, International journal of molecular sciences.

[9]  W. Mu,et al.  Development of a LAMP method for detecting the N75S mutant in SDHI-resistant Corynespora cassiicola. , 2020, Analytical biochemistry.

[10]  Vineeth N. Balasubramanian,et al.  Grad-CAM++: Generalized Gradient-Based Visual Explanations for Deep Convolutional Networks , 2017, 2018 IEEE Winter Conference on Applications of Computer Vision (WACV).

[11]  Qiufeng Wu,et al.  DCGAN-Based Data Augmentation for Tomato Leaf Disease Identification , 2020, IEEE Access.

[12]  Zu-jian Wu,et al.  The phylogeographic history of tomato mosaic virus in Eurasia. , 2020, Virology.

[13]  M. Ghanim,et al.  Evidence for transovarial transmission of tomato yellow leaf curl virus by its vector, the whitefly Bemisia tabaci. , 1998, Virology.

[14]  Serkan Kiranyaz,et al.  Coronavirus: Comparing COVID-19, SARS and MERS in the eyes of AI , 2020, ArXiv.

[15]  A. Ramsubhag,et al.  Flowering gene regulation in tomato plants treated with brown seaweed extracts , 2021 .

[16]  Mihai Aldea,et al.  Expression profiling soybean response to Pseudomonas syringae reveals new defense-related genes and rapid HR-specific downregulation of photosynthesis. , 2005, Molecular plant-microbe interactions : MPMI.

[17]  Yoshua Bengio,et al.  Object Recognition with Gradient-Based Learning , 1999, Shape, Contour and Grouping in Computer Vision.

[18]  Quoc V. Le,et al.  GPipe: Efficient Training of Giant Neural Networks using Pipeline Parallelism , 2018, ArXiv.

[19]  Marzena Nowakowska,et al.  Potato and Tomato Late Blight Caused by Phytophthora infestans: An Overview of Pathology and Resistance Breeding. , 2012, Plant disease.

[20]  C. A. Lopes,et al.  Management of Plant Disease Epidemics with Irrigation Practices , 2018, Irrigation in Agroecosystems.

[21]  L. Hanley-Bowdoin,et al.  A plant DNA virus replicates in the salivary glands of its insect vector via recruitment of host DNA synthesis machinery , 2020, Proceedings of the National Academy of Sciences.

[22]  Yiannis Ampatzidis,et al.  Detection of target spot and bacterial spot diseases in tomato using UAV-based and benchtop-based hyperspectral imaging techniques , 2019, Precision Agriculture.

[23]  Amith Khandakar,et al.  An Early Warning Tool for Predicting Mortality Risk of COVID-19 Patients Using Machine Learning , 2020, Cogn. Comput..

[24]  Gang Sun,et al.  Squeeze-and-Excitation Networks , 2017, 2018 IEEE/CVF Conference on Computer Vision and Pattern Recognition.

[25]  A. Yemets,et al.  Transgenic tomato lines expressing human lactoferrin show increased resistance to bacterial and fungal pathogens , 2020 .

[26]  Marcel Salathé,et al.  An open access repository of images on plant health to enable the development of mobile disease diagnostics through machine learning and crowdsourcing , 2015, ArXiv.

[27]  Mohammad Monir Uddin,et al.  Estimating Blood Pressure from the Photoplethysmogram Signal and Demographic Features Using Machine Learning Techniques , 2020, Sensors.

[28]  Mamun Bin Ibne Reaz,et al.  Real-Time Smart-Digital Stethoscope System for Heart Diseases Monitoring , 2019, Sensors.

[29]  E. Oerke Crop losses to pests , 2005, The Journal of Agricultural Science.

[30]  H. Prasanna,et al.  Tomato yellow leaf curl virus disease of tomato and its management through resistance breeding: a review , 2020 .

[31]  Sang Cheol Kim,et al.  A Robust Deep-Learning-Based Detector for Real-Time Tomato Plant Diseases and Pests Recognition , 2017, Sensors.

[32]  P. D. de Wit,et al.  Attenuation of Cf-mediated defense responses at elevated temperatures correlates with a decrease in elicitor-binding sites. , 2002, Molecular plant-microbe interactions : MPMI.

[33]  Mamun Bin Ibne Reaz,et al.  Can AI Help in Screening Viral and COVID-19 Pneumonia? , 2020, IEEE Access.

[34]  Antonio S. P. Gonzales,et al.  Photo-Voltaic (PV) Monitoring System, Performance Analysis and Power Prediction Models in Doha, Qatar , 2020, Renewable Energy - Technologies and Applications.

[35]  Zijian Zhang,et al.  Score-CAM: Score-Weighted Visual Explanations for Convolutional Neural Networks , 2020, 2020 IEEE/CVF Conference on Computer Vision and Pattern Recognition Workshops (CVPRW).

[36]  L. Broadbent Epidemiology and Control of Tomato Mosaic Virus , 1976 .

[37]  Keke Zhang,et al.  Can Deep Learning Identify Tomato Leaf Disease? , 2018, Adv. Multim..

[38]  Uday Pratap Singh,et al.  Bacterial Foraging Optimization Based Radial Basis Function Neural Network (BRBFNN) for Identification and Classification of Plant Leaf Diseases: An Automatic Approach Towards Plant Pathology , 2018, IEEE Access.

[39]  L. Datnoff,et al.  An overview of target spot of tomato caused by Corynespora cassiicola. , 2009 .

[40]  Y. Gafni,et al.  The Viral Etiology of Tomato Yellow Leaf Curl Disease - A Review , 2018 .

[41]  M. Ghanim,et al.  Tomato Yellow Leaf Curl Geminivirus (TYLCV-Is) Is Transmitted among Whiteflies (Bemisia tabaci) in a Sex-Related Manner , 2000, Journal of virology.

[42]  Amith Khandakar,et al.  Reliable Tuberculosis Detection Using Chest X-Ray With Deep Learning, Segmentation and Visualization , 2020, IEEE Access.

[43]  Shouan Zhang,et al.  Management of bacterial spot of tomato caused by copper-resistant Xanthomonas perforans using a small molecule compound carvacrol , 2020 .

[44]  Tong Chen,et al.  Roles of Aquaporins in Plant-Pathogen Interaction , 2020, Plants.

[45]  Mamun Bin Ibne Reaz,et al.  Design, Construction and Testing of IoT Based Automated Indoor Vertical Hydroponics Farming Test-Bed in Qatar , 2020, Sensors.

[46]  Roeland E. Voorrips,et al.  Tomato early blight (Alternaria solani): the pathogen, genetics, and breeding for resistance , 2006, Journal of General Plant Pathology.

[47]  Sunayana Arya,et al.  A Comparative Study of CNN and AlexNet for Detection of Disease in Potato and Mango leaf , 2019, 2019 International Conference on Issues and Challenges in Intelligent Computing Techniques (ICICT).

[48]  Abhishek Kumar Singh,et al.  ToLeD: Tomato Leaf Disease Detection using Convolution Neural Network , 2020, Procedia Computer Science.

[49]  T. M. Prajwala,et al.  Tomato Leaf Disease Detection Using Convolutional Neural Networks , 2018, 2018 Eleventh International Conference on Contemporary Computing (IC3).

[50]  H. Belshaw,et al.  The Food and Agriculture Organization of the United Nations , 1947, International Organization.

[51]  Md. Wasi Ul Kabir,et al.  Improved Segmentation Approach for Plant Disease Detection , 2019, 2019 1st International Conference on Advances in Science, Engineering and Robotics Technology (ICASERT).

[52]  Murvet Kirci,et al.  Disease detection on the leaves of the tomato plants by using deep learning , 2017, 2017 6th International Conference on Agro-Geoinformatics.

[53]  Martin Wattenberg,et al.  SmoothGrad: removing noise by adding noise , 2017, ArXiv.

[54]  Ben Glocker,et al.  Attention Gated Networks: Learning to Leverage Salient Regions in Medical Images , 2018, Medical Image Anal..

[55]  L. Oñate-Sánchez,et al.  Root Growth Adaptation to Climate Change in Crops , 2020, Frontiers in Plant Science.