HRE-type genes are regulated by growth-related changes in internal oxygen concentrations during the normal development of potato (Solanum tuberosum) tubers.
暂无分享,去创建一个
Björn Usadel | Federico Manuel Giorgi | Elmar Schmälzlin | Joost T. van Dongen | Francesco Licausi | B. Usadel | F. Giorgi | P. Geigenberger | J. V. van Dongen | Francesco Licausi | P. Perata | E. Schmälzlin | Peter Geigenberger | Pierdomenico Perata | Joost Thomas van Dongen | F. Licausi
[1] M. van Zanten,et al. Expression of rice SUB1A and SUB1C transcription factors in Arabidopsis uncovers flowering inhibition as a submergence tolerance mechanism. , 2011, The Plant journal : for cell and molecular biology.
[2] Francesco Licausi,et al. Regulation of the molecular response to oxygen limitations in plants. , 2011, The New phytologist.
[3] Joost T. van Dongen,et al. Comparative analysis between plant species of transcriptional and metabolic responses to hypoxia. , 2011, The New phytologist.
[4] F. Giorgi,et al. Genomic and transcriptomic analysis of the AP2/ERF superfamily in Vitis vinifera , 2010, BMC Genomics.
[5] D. Llewellyn,et al. Comparisons of early transcriptome responses to low-oxygen environments in three dicotyledonous plant species , 2010 .
[6] G. An,et al. OsCOL4 is a constitutive flowering repressor upstream of Ehd1 and downstream of OsphyB. , 2010, The Plant journal : for cell and molecular biology.
[7] Jun Yang,et al. Arabidopsis RAP2.2: An Ethylene Response Transcription Factor That Is Important for Hypoxia Survival1[W][OA] , 2010, Plant Physiology.
[8] A. Mustroph,et al. Cross-Kingdom Comparison of Transcriptomic Adjustments to Low-Oxygen Stress Highlights Conserved and Plant-Specific Responses1[W][OA] , 2010, Plant Physiology.
[9] Joost T. van Dongen,et al. HRE1 and HRE2, two hypoxia-inducible ethylene response factors, affect anaerobic responses in Arabidopsis thaliana. , 2010, The Plant journal : for cell and molecular biology.
[10] Richard O C Oreffo,et al. Hypoxia inducible factors regulate pluripotency and proliferation in human embryonic stem cells cultured at reduced oxygen tensions , 2010, Reproduction.
[11] Uwe Sonnewald,et al. Comparative transcriptome analysis coupled to X-ray CT reveals sucrose supply and growth velocity as major determinants of potato tuber starch biosynthesis , 2010, BMC Genomics.
[12] Staffan Persson,et al. Co-expression tools for plant biology: opportunities for hypothesis generation and caveats. , 2009, Plant, cell & environment.
[13] Chung-An Lu,et al. Coordinated Responses to Oxygen and Sugar Deficiency Allow Rice Seedlings to Tolerate Flooding , 2009, Science Signaling.
[14] Mark Stitt,et al. A guide to using MapMan to visualize and compare Omics data in plants: a case study in the crop species, Maize. , 2009, Plant, cell & environment.
[15] Xian-Jun Song,et al. The ethylene response factors SNORKEL1 and SNORKEL2 allow rice to adapt to deep water , 2009, Nature.
[16] J. W. Allwood,et al. 1H NMR, GC-EI-TOFMS, and data set correlation for fruit metabolomics: application to spatial metabolite analysis in melon. , 2009, Analytical chemistry.
[17] Geoffrey J. Barton,et al. Jalview Version 2—a multiple sequence alignment editor and analysis workbench , 2009, Bioinform..
[18] Ibrahim Emam,et al. ArrayExpress update—from an archive of functional genomics experiments to the atlas of gene expression , 2008, Nucleic Acids Res..
[19] Peer Bork,et al. SMART 6: recent updates and new developments , 2008, Nucleic Acids Res..
[20] Samuel Arvidsson,et al. QuantPrime – a flexible tool for reliable high-throughput primer design for quantitative PCR , 2008, BMC Bioinformatics.
[21] J. Bailey-Serres,et al. Submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice , 2008, Proceedings of the National Academy of Sciences.
[22] D. Choi,et al. Ectopic expression of pepper CaPF1 in potato enhances multiple stresses tolerance and delays initiation of in vitro tuberization , 2008, Planta.
[23] Uwe Scholz,et al. Genes driving potato tuber initiation and growth: identification based on transcriptional changes using the POCI array , 2008, Functional & Integrative Genomics.
[24] E. Ábrahám,et al. Functional Identification of Arabidopsis Stress Regulatory Genes Using the Controlled cDNA Overexpression System1[W][OA] , 2008, Plant Physiology.
[25] Tanya Z. Berardini,et al. The Arabidopsis Information Resource (TAIR): gene structure and function annotation , 2007, Nucleic Acids Res..
[26] J. Cary,et al. Soil oxygen and moisture in relation to Russet Burbank potato yield and quality , 1984, American Potato Journal.
[27] J. Cary. Effects of relative humidity, oxygen, and carbon dioxide on initiation and early development of stolons and tubers , 2008, American Potato Journal.
[28] H. Rolletschek,et al. Low oxygen sensing and balancing in plant seeds: a role for nitric oxide , 2007, The New phytologist.
[29] Rodrigo Lopez,et al. Clustal W and Clustal X version 2.0 , 2007, Bioinform..
[30] C. Bachem,et al. StGA2ox1 is induced prior to stolon swelling and controls GA levels during potato tuber development. , 2007, The Plant journal : for cell and molecular biology.
[31] M. Nei,et al. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. , 2007, Molecular biology and evolution.
[32] Paul Horton,et al. Nucleic Acids Research Advance Access published May 21, 2007 WoLF PSORT: protein localization predictor , 2007 .
[33] O. Beretta,et al. Transcript Profiling of the Anoxic Rice Coleoptile[W][OA] , 2007, Plant Physiology.
[34] Taro Ogawa,et al. Mutual regulation of Arabidopsis thaliana ethylene-responsive element binding protein and a plant floral homeotic gene, APETALA2. , 2007, Annals of botany.
[35] Yves Gibon,et al. PageMan: An interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments , 2006, BMC Bioinformatics.
[36] J. Bailey-Serres,et al. Sub1A is an ethylene-response-factor-like gene that confers submergence tolerance to rice , 2006, Nature.
[37] J. Bailey-Serres,et al. A Variable Cluster of Ethylene Response Factor–Like Genes Regulates Metabolic and Developmental Acclimation Responses to Submergence in Rice[W] , 2006, The Plant Cell Online.
[38] S. Prat,et al. Seasonal control of tuberization in potato: conserved elements with the flowering response. , 2006, Annual review of plant biology.
[39] S. Davis. Faculty Opinions recommendation of Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis. , 2006 .
[40] Hans-Gerd Löhmannsröben,et al. New challenges in biophotonics: laser-based fluoroimmuno analysis and in vivo optical oxygen monitoring , 2005, EPIC/SPIE Workshop on Laser Applications in Europe.
[41] L. Hoffmann,et al. Housekeeping gene selection for real-time RT-PCR normalization in potato during biotic and abiotic stress. , 2005, Journal of experimental botany.
[42] Ingo Klimant,et al. An optical multifrequency phase-modulation method using microbeads for measuring intracellular oxygen concentrations in plants. , 2005, Biophysical journal.
[43] Joost T. van Dongen,et al. Phloem Import and Storage Metabolism Are Highly Coordinated by the Low Oxygen Concentrations within Developing Wheat Seeds1 , 2004, Plant Physiology.
[44] R. Tibshirani,et al. Least angle regression , 2004, math/0406456.
[45] Robert C. Edgar,et al. MUSCLE: multiple sequence alignment with high accuracy and high throughput. , 2004, Nucleic acids research.
[46] P. Perata,et al. Effect of anoxia on the induction of α-amylase in cereal seeds , 1993, Planta.
[47] Daniel P. Matton,et al. Alcohol dehydrogenase gene expression in potato following elicitor and stress treatment , 1990, Plant Molecular Biology.
[48] A. Fernie,et al. A Bypass of Sucrose Synthase Leads to Low Internal Oxygen and Impaired Metabolic Performance in Growing Potato Tubers1 , 2003, Plant Physiology.
[49] P. Geigenberger,et al. Response of plant metabolism to too little oxygen. , 2003, Current opinion in plant biology.
[50] Joost T. van Dongen,et al. Phloem Metabolism and Function Have to Cope with Low Internal Oxygen1 , 2003, Plant Physiology.
[51] A. Ohyama,et al. CIP353 encodes an AP2/ERF-domain protein in potato (Solanum tuberosum L.) and responds slowly to cold stress. , 2003, Plant & cell physiology.
[52] P. Geigenberger,et al. Regulation of sucrose to starch conversion in growing potato tubers. , 2003, Journal of experimental botany.
[53] M. Stitt,et al. Altered metabolic fluxes result from shifts in metabolite levels in sucrose phosphorylase‐expressing potato tubers , 2002 .
[54] S. Kim,et al. High-Leve 1 Tuber Expression and Sucrose lnducibility of a Potato Sus 4 Sucrose Synthase Gene Require 5 ' and 3 ' Flanking Sequences and the Leader lntron , 2002 .
[55] Patrik D'haeseleer,et al. Genetic network inference: from co-expression clustering to reverse engineering , 2000, Bioinform..
[56] Sjef Smeekens,et al. SUGAR-INDUCED SIGNAL TRANSDUCTION IN PLANTS. , 2000, Annual review of plant physiology and plant molecular biology.
[57] M. Stitt,et al. Metabolic Activity Decreases as an Adaptive Response to Low Internal Oxygen in Growing Potato Tubers , 2000, Biological chemistry.
[58] P. D’haeseleer,et al. Mining the gene expression matrix: inferring gene relationships from large scale gene expression data , 1998 .
[59] D. Vreugdenhil,et al. The role of gibberellin, abscisic acid, and sucrose in the regulation of potato tuber formation in vitro , 1998, Plant physiology.
[60] M. Holcombe,et al. Information Processing in Cells and Tissues , 1998, Springer US.
[61] Thomas L. Madden,et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. , 1997, Nucleic acids research.
[62] R. Visser,et al. Developmental changes of enzymes involved in conversion of sucrose to hexose-phosphate during early tuberisation of potato , 1997, Planta.
[63] U. Wobus,et al. Sugar import and metabolism during seed development , 1997 .
[64] R. Tibshirani. Regression Shrinkage and Selection via the Lasso , 1996 .
[65] H. Fu,et al. High-level tuber expression and sucrose inducibility of a potato Sus4 sucrose synthase gene require 5' and 3' flanking sequences and the leader intron. , 1995, The Plant cell.
[66] H. Fu,et al. Sink- and vascular-associated sucrose synthase functions are encoded by different gene classes in potato. , 1995, The Plant cell.
[67] M. Stitt,et al. Changes of carbohydrates, metabolites and enzyme activities in potato tubers during development, and within a single tuber along astolon-apexgradient , 1993 .
[68] N. Saitou,et al. The neighbor-joining method: a new method for reconstructing phylogenetic trees. , 1987, Molecular biology and evolution.
[69] J. Felsenstein. CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP , 1985, Evolution; international journal of organic evolution.
[70] N. Banks. Evaluation of Methods for Determining Internal Gases in Banana Fruit , 1983 .
[71] H. Akaike. A new look at the statistical model identification , 1974 .
[72] V. Bryson,et al. Evolving Genes and Proteins. , 1965, Science.
[73] L. Pauling,et al. Evolutionary Divergence and Convergence in Proteins , 1965 .
[74] J. Magness. Composition of Gases in Intercellular Spaces of Apples and Potatoes , 1920, Botanical Gazette.