Comparative phylogenomic analysis provides insights into TCP gene functions in Sorghum

[1]  M. Nicolas,et al.  TCP factors: new kids on the signaling block. , 2016, Current opinion in plant biology.

[2]  A. Goossens,et al.  Lessons from Domestication: Targeting Cis-Regulatory Elements for Crop Improvement. , 2016, Trends in plant science.

[3]  Yajun Xi,et al.  PvTB1, a Teosinte Branched1 Gene Homolog, Negatively Regulates Tillering in Switchgrass , 2016, Journal of Plant Growth Regulation.

[4]  Don C. Jones,et al.  Comprehensive analysis of TCP transcription factors and their expression during cotton (Gossypium arboreum) fiber early development , 2016, Scientific Reports.

[5]  Robert D. Finn,et al.  The Pfam protein families database: towards a more sustainable future , 2015, Nucleic Acids Res..

[6]  Elizabeth M. Hawkins,et al.  Genomewide association for sugar yield in sweet sorghum , 2015 .

[7]  Emily M. Strait,et al.  The arabidopsis information resource: Making and mining the “gold standard” annotated reference plant genome , 2015, Genesis.

[8]  Shutian Li The Arabidopsis thaliana TCP transcription factors: A broadening horizon beyond development , 2015, Plant signaling & behavior.

[9]  A. Tyagi,et al.  OsTCP19 influences developmental and abiotic stress signaling by modulating ABI4-mediated pathways , 2015, Scientific Reports.

[10]  M. S. Mukhtar,et al.  TCP three-way handshake: linking developmental processes with plant immunity. , 2015, Trends in plant science.

[11]  Henry D. Priest,et al.  Alternative splicing in plants: directing traffic at the crossroads of adaptation and environmental stress. , 2015, Current opinion in plant biology.

[12]  Y. Makita,et al.  MOROKOSHI: Transcriptome Database in Sorghum bicolor , 2014, Plant & cell physiology.

[13]  Yike Guo,et al.  High dimensional biological data retrieval optimization with NoSQL technology , 2014, BMC Genomics.

[14]  Ryan F. McCormick,et al.  Energy sorghum--a genetic model for the design of C4 grass bioenergy crops. , 2014, Journal of experimental botany.

[15]  M. Knight,et al.  Transcriptomic analysis of Sorghum bicolor responding to combined heat and drought stress , 2014, BMC Genomics.

[16]  S. H. Kim,et al.  The Arabidopsis immune adaptor SRFR1 interacts with TCP transcription factors that redundantly contribute to effector-triggered immunity. , 2014, The Plant journal : for cell and molecular biology.

[17]  S. Roy,et al.  Evaluating contribution of ionic, osmotic and oxidative stress components towards salinity tolerance in barley , 2014, BMC Plant Biology.

[18]  Alex Feltus,et al.  A Sorghum bicolor expression atlas reveals dynamic genotype-specific expression profiles for vegetative tissues of grain, sweet and bioenergy sorghums , 2014, BMC Plant Biology.

[19]  Yamile Marquez,et al.  Complexity of the Alternative Splicing Landscape in Plants[C][W][OPEN] , 2013, Plant Cell.

[20]  R. Lebrun,et al.  The intrinsically disordered C-terminal region of Arabidopsis thaliana TCP8 transcription factor acts both as a transactivation and self-assembly domain. , 2013, Molecular bioSystems.

[21]  D. Luquet,et al.  Grain, sugar and biomass accumulation in tropical sorghums. I. Trade-offs and effects of phenological plasticity. , 2013, Functional plant biology : FPB.

[22]  K. Chong,et al.  The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14 , 2013, Nature Communications.

[23]  Lihuang Zhu,et al.  Constitutive Expression of a miR319 Gene Alters Plant Development and Enhances Salt and Drought Tolerance in Transgenic Creeping Bentgrass1[W][OA] , 2013, Plant Physiology.

[24]  M. Moore,et al.  Introns in UTRs: Why we should stop ignoring them , 2012, BioEssays : news and reviews in molecular, cellular and developmental biology.

[25]  S. Shiu,et al.  Comparative transcriptomics of three Poaceae species reveals patterns of gene expression evolution. , 2012, The Plant journal : for cell and molecular biology.

[26]  David M. Goodstein,et al.  Phytozome: a comparative platform for green plant genomics , 2011, Nucleic Acids Res..

[27]  H. R. Crollius,et al.  Preventing Dangerous Nonsense: Selection for Robustness to Transcriptional Error in Human Genes , 2011, PLoS genetics.

[28]  Hee-Jong Koh,et al.  Teosinte Branched 1 modulates tillering in rice plants , 2011, Plant Cell Reports.

[29]  Robert D. Finn,et al.  HMMER web server: interactive sequence similarity searching , 2011, Nucleic Acids Res..

[30]  S. Kapoor,et al.  Comparative transcript profiling of TCP family genes provide insight into gene functions and diversification in rice and Arabidopsis , 2010 .

[31]  K. Chou,et al.  Plant-mPLoc: A Top-Down Strategy to Augment the Power for Predicting Plant Protein Subcellular Localization , 2010, PloS one.

[32]  Sai Guna Ranjan Gurazada,et al.  Genome sequencing and analysis of the model grass Brachypodium distachyon , 2010, Nature.

[33]  V. Vogel Journal club , 2010, Nature.

[34]  Mikael Bodén,et al.  MEME Suite: tools for motif discovery and searching , 2009, Nucleic Acids Res..

[35]  Ghislain Breton,et al.  A Functional Genomics Approach Reveals CHE as a Component of the Arabidopsis Circadian Clock , 2009, Science.

[36]  E. Pennisi,et al.  How Sorghum Withstands Heat and Drought , 2009, Science.

[37]  Mihaela M. Martis,et al.  The Sorghum bicolor genome and the diversification of grasses , 2009, Nature.

[38]  D. Janies,et al.  GRASSIUS: A Platform for Comparative Regulatory Genomics across the Grasses1[W][OA] , 2008, Plant Physiology.

[39]  D. Luo,et al.  RETARDED PALEA1 Controls Palea Development and Floral Zygomorphy in Rice1[W] , 2008, Plant Physiology.

[40]  J. Bähler,et al.  Rapidly regulated genes are intron poor. , 2008, Trends in genetics : TIG.

[41]  Yonghong Wang,et al.  Molecular basis of plant architecture. , 2008, Annual review of plant biology.

[42]  Xin Chen,et al.  PlantTFDB: a comprehensive plant transcription factor database , 2007, Nucleic Acids Res..

[43]  M. Nei,et al.  MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. , 2007, Molecular biology and evolution.

[44]  Edward J. Perkins,et al.  Comparison of transcriptional responses in liver tissue and primary hepatocyte cell cultures after exposure to hexahydro-1, 3, 5-trinitro-1, 3, 5-triazine , 2006, BMC Bioinformatics.

[45]  John A. Hamilton,et al.  The TIGR Rice Genome Annotation Resource: improvements and new features , 2006, Nucleic Acids Res..

[46]  Alessandro Vullo,et al.  Distill: a suite of web servers for the prediction of one-, two- and three-dimensional structural features of proteins , 2006, BMC Bioinformatics.

[47]  Jenn-Kang Hwang,et al.  Prediction of protein subcellular localization , 2006, Proteins.

[48]  Tesfamichael H Kebrom,et al.  Phytochrome B Represses Teosinte Branched1 Expression and Induces Sorghum Axillary Bud Outgrowth in Response to Light Signals1 , 2006, Plant Physiology.

[49]  Ravinder Singh,et al.  Fast-Find: A novel computational approach to analyzing combinatorial motifs , 2006, BMC Bioinformatics.

[50]  E. Tkachenko,et al.  Syndecans: new kids on the signaling block. , 2005, Circulation research.

[51]  Makoto Matsuoka,et al.  The OsTB1 gene negatively regulates lateral branching in rice. , 2003, The Plant journal : for cell and molecular biology.

[52]  K. Katoh,et al.  MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. , 2002, Nucleic acids research.

[53]  Zhirong Sun,et al.  Support vector machine approach for protein subcellular localization prediction , 2001, Bioinform..

[54]  K. Baba,et al.  Involvement of a nuclear-encoded basic helix-loop-helix protein in transcription of the light-responsive promoter of psbD. , 2001, Plant physiology.

[55]  E. Coen,et al.  The TCP domain: a motif found in proteins regulating plant growth and development. , 1999, The Plant journal : for cell and molecular biology.

[56]  S. Kosugi,et al.  PCF1 and PCF2 specifically bind to cis elements in the rice proliferating cell nuclear antigen gene. , 1997, The Plant cell.

[57]  J. Doebley,et al.  The evolution of apical dominance in maize , 1997, Nature.

[58]  E. Coen,et al.  Origin of floral asymmetry in Antirrhinum , 1996, Nature.

[59]  A. Melake-Berhan,et al.  Grain Mold Resistance and Polyphenol Accumulation in Sorghum , 1996 .

[60]  V. L. Lechtenberg,et al.  Phenotype, Fiber Composition, and in vitro Dry Matter Disappearance of Chemically Induced Brown Midrib (bmr) Mutants of Sorghum 1 , 1978 .

[61]  Martyn Shuttleworth,et al.  What is a NOT a Literature Review ? , 2018 .

[62]  M. Diouf Production and Use Sorghum: A Literature Review , 2016 .

[63]  Zhongyuan Hu,et al.  Strigolactone and cytokinin act antagonistically in regulating rice mesocotyl elongation in darkness. , 2014, Plant & cell physiology.

[64]  P. Cubas,et al.  TCP genes: a family snapshot ten years later. , 2010, Trends in plant science.

[65]  Keun-Joon Park,et al.  Nucleic Acids Research Advance Access published May 21, 2007 WoLF PSORT: protein localization predictor , 2007 .