论文信息 - RDP: detection of recombination amongst aligned sequences

RDP: detection of recombination amongst aligned sequences

SUMMARY Recombination Detection Program (RDP) is a program that applies a pairwise scanning approach to the detection of recombination amongst a group of aligned DNA sequences. The software runs under Windows95 and combines highly automated screening of large numbers of sequences with a highly interactive interface for examining the results of the analyses.

Darren Martin | Ed Rybicki | D. Martin | E. Rybicki

[1] G. McGuire,et al. A graphical method for detecting recombination in phylogenetic data sets. , 1997, Molecular biology and evolution.

[2] D. Burke,et al. Identification of breakpoints in intergenotypic recombinants of HIV type 1 by bootscanning. , 1995, AIDS research and human retroviruses.

[3] A. Halpern,et al. A computer program designed to screen rapidly for HIV type 1 intersubtype recombinant sequences. , 1995, AIDS research and human retroviruses.

[4] J. Rice. Mathematical Statistics and Data Analysis , 1988 .

[5] S. Sawyer. Statistical tests for detecting gene conversion. , 1989, Molecular biology and evolution.

[6] J. M. Smith,et al. Detecting recombination from gene trees. , 1998, Molecular biology and evolution.

[7] E. Holmes,et al. A likelihood method for the detection of selection and recombination using nucleotide sequences. , 1997, Molecular biology and evolution.

[8] J. Hein. Reconstructing evolution of sequences subject to recombination using parsimony. , 1990, Mathematical biosciences.

[9] G. Weiller. Phylogenetic profiles: a graphical method for detecting genetic recombinations in homologous sequences. , 1998, Molecular biology and evolution.