Spectroscopy with computational analysis in virological studies: A decade (2006–2016)
暂无分享,去创建一个
Marfran C. D. Santos | Camilo L. M. Morais | Kássio M. G. Lima | Yasmin M. Nascimento | Josélio Maria Galvão de Araújo | J. Araújo | Marfran C. D. Santos | Y. M. Nascimento | K. M. Lima | Marfran C. D. Santos
[1] C. Pasquini. Near Infrared Spectroscopy: fundamentals, practical aspects and analytical applications , 2003 .
[2] S. Galal,et al. Chronic viral hepatitis C in pediatric age group; assessment of viral activity and hepatic fibrosis by 1H magnetic resonance spectroscopy and diffusion weighted imaging in asymptomatic patient , 2016 .
[3] I. Zabalgogeazcoa,et al. A spectroscopy approach to the study of virus infection in the endophytic fungus Epichloë festucae , 2011, Virology Journal.
[4] Taewook Kang,et al. Identification of Newly Emerging Influenza Viruses by Surface-Enhanced Raman Spectroscopy. , 2015, Analytical chemistry.
[5] C. Milstein,et al. Continuous cultures of fused cells secreting antibody of predefined specificity , 1975, Nature.
[6] Francis L Martin,et al. Biospectroscopy to metabolically profile biomolecular structure: a multistage approach linking computational analysis with biomarkers. , 2011, Journal of proteome research.
[7] Paul Dumas,et al. Resonant Mie scattering in infrared spectroscopy of biological materials--understanding the 'dispersion artefact'. , 2009, The Analyst.
[8] Leann Tilley,et al. Diagnosing malaria infected cells at the single cell level using focal plane array Fourier transform infrared imaging spectroscopy. , 2014, The Analyst.
[9] Roberto Kawakami Harrop Galvão,et al. The successive projections algorithm for spectral variable selection in classification problems , 2005 .
[10] R. Brereton,et al. Comparison of performance of five common classifiers represented as boundary methods: Euclidean Distance to Centroids, Linear Discriminant Analysis, Quadratic Discriminant Analysis, Learning Vector Quantization and Support Vector Machines, as dependent on data structure , 2009 .
[11] M. C. U. Araújo,et al. The successive projections algorithm for variable selection in spectroscopic multicomponent analysis , 2001 .
[12] R. Brereton,et al. Partial least squares discriminant analysis: taking the magic away , 2014 .
[13] B. Kowalski,et al. Partial least-squares regression: a tutorial , 1986 .
[14] F. Martin,et al. ATR-FTIR spectroscopy coupled with chemometric analysis discriminates normal, borderline and malignant ovarian tissue: classifying subtypes of human cancer. , 2016, The Analyst.
[15] E. Blout,et al. Infrared Spectra of Tissues. , 1949, Science.
[16] J. Safdieh,et al. The varicella zoster virus vasculopathies , 2008, Neurology.
[17] Holly J. Butler,et al. Gold nanoparticles as a substrate in bio-analytical near-infrared surface-enhanced Raman spectroscopy† †Electronic supplementary information (ESI) available. See DOI: 10.1039/c4an01899k Click here for additional data file. , 2015, The Analyst.
[18] John B. Shoven,et al. I , Edinburgh Medical and Surgical Journal.
[19] K. Mullis,et al. Enzymatic amplification of beta-globin genomic sequences and restriction site analysis for diagnosis of sickle cell anemia. , 1985, Science.
[20] Jay Shendure,et al. Identification of foreign gene sequences by transcript filtering against the human genome , 2002, Nature Genetics.
[21] Melanie Keller,et al. Principles Of Molecular Virology , 2016 .
[22] P ? ? ? ? ? ? ? % ? ? ? ? , 1991 .
[23] M. Weinstein,et al. Diagnostic virology. , 2000, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.
[24] A. Shahzad,et al. Journal of Translational Medicine BioMed Central Review Surgical inflammation: a pathophysiological rainbow , 2009 .
[25] Holly J. Butler,et al. Using Raman spectroscopy to characterize biological materials , 2016, Nature Protocols.
[26] Naifu Jin,et al. Fingerprinting microbiomes towards screening for microbial antibiotic resistance. , 2017, Integrative biology : quantitative biosciences from nano to macro.
[27] M M G Godoy,et al. Hepatitis C virus infection diagnosis using metabonomics , 2010, Journal of viral hepatitis.
[28] M. A. Trindade,et al. Baseline-Corrected Second-Order Derivative Electroanalysis Combined With Ultrasound-Assisted Liquid-Liquid Microextraction: Simultaneous Quantification of Fluoroquinolones at Low Levels. , 2016, Analytical chemistry.
[29] Masanori Sawa,et al. Study of virus by Raman spectroscopy , 2013, Photonics West - Biomedical Optics.
[30] Kamila Moor,et al. Noninvasive and label-free determination of virus infected cells by Raman spectroscopy , 2014, Journal of biomedical optics.
[31] Francis L Martin,et al. Extracting biological information with computational analysis of Fourier-transform infrared (FTIR) biospectroscopy datasets: current practices to future perspectives. , 2012, The Analyst.
[32] Kássio M. G. Lima,et al. FTIR microspectroscopy coupled with variable selection methods for the identification of flunitrazepam in necrophagous flies , 2016 .
[33] Akikazu Sakudo,et al. Diagnosis of HIV-1 infection by near-infrared spectroscopy: analysis using molecular clones of various HIV-1 subtypes. , 2012, Clinica chimica acta; international journal of clinical chemistry.
[34] Luciano Bachmann,et al. Fluorescence Spectroscopy of Biological Tissues—A Review , 2006 .
[35] Audy G. Whitman,et al. Raman spectroscopy: the gateway into tomorrow's virology , 2006, Virology Journal.
[36] Francis L Martin,et al. Distinguishing cell types or populations based on the computational analysis of their infrared spectra , 2010, Nature Protocols.
[37] Laurinda F S Siqueira,et al. MIR-biospectroscopy coupled with chemometrics in cancer studies. , 2016, The Analyst.
[39] Francis L Martin,et al. Fourier-transform infrared spectroscopy coupled with a classification machine for the analysis of blood plasma or serum: a novel diagnostic approach for ovarian cancer. , 2013, The Analyst.
[40] T. Fearn,et al. On the geometry of SNV and MSC , 2009 .
[41] S. Shanmukh,et al. Identification and classification of respiratory syncytial virus (RSV) strains by surface-enhanced Raman spectroscopy and multivariate statistical techniques , 2008, Analytical and bioanalytical chemistry.
[42] Na Li,et al. A novel baseline-correction method for standard addition based derivative spectra and its application to quantitative analysis of benzo(a)pyrene in vegetable oil samples. , 2011, The Analyst.
[43] Kássio M G Lima,et al. Rapid discrimination of Klebsiella pneumoniae carbapenemase 2-producing and non-producing Klebsiella pneumoniae strains using near-infrared spectroscopy (NIRS) and multivariate analysis. , 2015, Talanta.
[44] D L WOERNLEY. Infrared absorption curves for normal and neoplastic tissues and related biological substances. , 1952, Cancer research.
[45] Thomas Peters,et al. NMR spectroscopy techniques for screening and identifying ligand binding to protein receptors. , 2003, Angewandte Chemie.
[46] G. G. Stokes. "J." , 1890, The New Yale Book of Quotations.
[47] Harald Martens,et al. RMieS‐EMSC correction for infrared spectra of biological cells: Extension using full Mie theory and GPU computing , 2010, Journal of biophotonics.
[48] M. Elkind,et al. The varicella zoster virus vasculopathies: Clinical, CSF, imaging, and virologic features , 2009, Neurology.
[49] Ying Sun,et al. Metabolomic Profiling of Autoimmune Hepatitis: The Diagnostic Utility of Nuclear Magnetic Resonance Spectroscopy. , 2014, Journal of proteome research.
[50] Marfran C. D. Santos,et al. ATR-FTIR spectroscopy coupled with multivariate analysis techniques for the identification of DENV-3 in different concentrations in blood and serum: a new approach , 2017 .
[51] Shiv K. Sharma,et al. Micro-Raman spectroscopy study of ALVAC virus infected chicken embryo cells , 2011, Defense + Commercial Sensing.
[52] P. Walsh,et al. Simultaneous Amplification and Detection of Specific DNA Sequences , 1992, Bio/Technology.
[53] Jürgen Popp,et al. Raman to the limit: tip‐enhanced Raman spectroscopic investigations of a single tobacco mosaic virus , 2009 .
[54] Maria Fernanda Pimentel,et al. Aspects of the successive projections algorithm for variable selection in multivariate calibration applied to plasma emission spectrometry , 2001 .
[55] Akikazu Sakudo,et al. Near-infrared spectroscopy: Promising diagnostic tool for viral infections , 2006, Biochemical and Biophysical Research Communications.
[56] A. Salman,et al. Characterization and detection of Vero cells infected with Herpes Simplex Virus type 1 using Raman spectroscopy and advanced statistical methods. , 2014, Methods.
[57] M. Diem,et al. A decade of vibrational micro-spectroscopy of human cells and tissue (1994-2004). , 2004, The Analyst.
[58] Douglas B. Kell,et al. Genetic algorithms as a method for variable selection in multiple linear regression and partial least squares regression, with applications to pyrolysis mass spectrometry , 1997 .
[59] Imran I. Patel,et al. Surface-Enhanced Raman Spectroscopy of the Endothelial Cell Membrane , 2014, PloS one.
[60] Zhiqiang Hu,et al. Detecting Food‐ and Waterborne Viruses by Surface‐Enhanced Raman Spectroscopy , 2010, Journal of food science.
[61] Norbert Bannert,et al. Evaluation of tip-enhanced Raman spectroscopy for characterizing different virus strains. , 2011, The Analyst.
[62] Heng Tao Shen,et al. Principal Component Analysis , 2009, Encyclopedia of Biometrics.
[63] B. Mizaikoff,et al. Application of multivariate data-analysis techniques to biomedical diagnostics based on mid-infrared spectroscopy , 2008, Analytical and bioanalytical chemistry.
[64] F. Martin,et al. Vibrational spectroscopy of biofluids for disease screening or diagnosis: translation from the laboratory to a clinical setting , 2014, Journal of biophotonics.
[65] Neil Boonham,et al. Methods in virus diagnostics: from ELISA to next generation sequencing. , 2014, Virus research.
[66] J. O. W. Bland,et al. Complement-Fixation with Filtrable Viruses and their Antisera , 1929 .
[67] M. Manley. Near-infrared spectroscopy and hyperspectral imaging: non-destructive analysis of biological materials. , 2014, Chemical Society reviews.
[68] J. H. Ward. Hierarchical Grouping to Optimize an Objective Function , 1963 .
[69] T. H. Weller,et al. Production of Hemagglutinin by Mumps and Influenza A Viruses in Suspended Cell Tissue Cultures.∗ , 1948, Proceedings of the Society for Experimental Biology and Medicine. Society for Experimental Biology and Medicine.
[70] Ernst Wit,et al. Identifying Variables Responsible for Clustering in Discriminant Analysis of Data from Infrared Microspectroscopy of a Biological Sample , 2007, J. Comput. Biol..
[71] C LIU,et al. Rapid Diagnosis of Human Influenza Infection from Nasal Smears by Means of Fluorescein-Labeled Antibody.∗ † , 1956, Proceedings of the Society for Experimental Biology and Medicine. Society for Experimental Biology and Medicine.
[72] Aline S. Marques,et al. Feature selection strategies for identification of Staphylococcus aureus recovered in blood cultures using FT-IR spectroscopy successive projections algorithm for variable selection: a case study. , 2014, Journal of microbiological methods.
[73] R. Amathieu,et al. Nuclear magnetic resonance based metabolomics and liver diseases: Recent advances and future clinical applications. , 2016, World journal of gastroenterology.
[74] D. B. Hibbert,et al. Vocabulary of concepts and terms in chemometrics (IUPAC Recommendations 2016) , 2016 .
[75] Yan Li,et al. Membrane topology of NS2B of dengue virus revealed by NMR spectroscopy. , 2015, Biochimica et biophysica acta.
[76] Christian Drosten,et al. Rapid Detection and Quantification of RNA of Ebola and Marburg Viruses, Lassa Virus, Crimean-Congo Hemorrhagic Fever Virus, Rift Valley Fever Virus, Dengue Virus, and Yellow Fever Virus by Real-Time Reverse Transcription-PCR , 2002, Journal of Clinical Microbiology.
[77] Rohit Bhargava,et al. Using Fourier transform IR spectroscopy to analyze biological materials , 2014, Nature Protocols.
[78] A M Dumas,et al. [Rapid virus diagnosis]. , 1984, Nederlands tijdschrift voor geneeskunde.
[79] Landulfo Silveira,et al. Identification of hepatitis C in human blood serum by near-infrared Raman spectroscopy , 2008 .
[80] Mark R Riley,et al. Detection and quantification of poliovirus infection using FTIR spectroscopy and cell culture , 2011, Journal of biological engineering.
[81] Pedro Carmona,et al. Structural characterization of the 5' untranslated RNA of hepatitis C virus by vibrational spectroscopy. , 2006, Biophysical chemistry.
[82] S. Rehman,et al. Fourier Transform Infrared (FTIR) Spectroscopy of Biological Tissues , 2008 .
[83] Akikazu Sakudo,et al. Discrimination of influenza virus-infected nasal fluids by Vis-NIR spectroscopy. , 2012, Clinica chimica acta; international journal of clinical chemistry.