论文信息 - CGHMultiArray: exact P-values for multi-array comparative genomic hybridization data - 字舞流文

CGHMultiArray: exact P-values for multi-array comparative genomic hybridization data

We compute P-values, based on the Wilcoxon test with ties, to compare two conditions with array comparative genomic hybridization data, and we provide a simple interface to export and plot these P-values.

Ruud H. Brakenhoff | Bauke Ylstra | Mark A. van de Wiel | Serge J. Smeets | B. Ylstra | R. Brakenhoff | M. A. Wiel | S. Smeets

[1] Mark A. van de Wiel,et al. The split-up algorithm: a fast symbolic method for computing p-values of distribution-free statistics , 2001, Comput. Stat..

[2] P. Sen,et al. Theory of rank tests , 1969 .

[3] Elena Marchiori,et al. Breakpoint identification and smoothing of array comparative genomic hybridization data , 2004, Bioinform..

[4] M. Wigler,et al. Circular binary segmentation for the analysis of array-based DNA copy number data. , 2004, Biostatistics.

[5] Y. Benjamini,et al. THE CONTROL OF THE FALSE DISCOVERY RATE IN MULTIPLE TESTING UNDER DEPENDENCY , 2001 .

[6] Marcello Pagano,et al. Permutation Distributions via Generating Functions with Applications to Sensitivity Analysis of Discrete Data , 1996 .

[7] Naftali Tishby,et al. Efficient Exact p-Value Computation for Small Sample, Sparse, and Surprising Categorical Data , 2004, J. Comput. Biol..

[8] B. Ylstra,et al. Microarray‐based comparative genomic hybridization and its applications in human genetics , 2004, Clinical genetics.

[9] R. Tibshirani,et al. A method for calling gains and losses in array CGH data. , 2005, Biostatistics.