Sequence motif finder using memetic algorithm
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André Yoshiaki Kashiwabara | Danilo Sipoli Sanches | Jader M. Caldonazzo Garbelini | D. Sanches | A. Kashiwabara | Jader M. Caldonazzo Garbelini
[1] Wyeth W. Wasserman,et al. The Next Generation of Transcription Factor Binding Site Prediction , 2013, PLoS Comput. Biol..
[2] A. Alexandrova. The British Journal for the Philosophy of Science , 1965, Nature.
[3] P. D’haeseleer. How does DNA sequence motif discovery work? , 2006, Nature Biotechnology.
[4] S. Shapiro,et al. An Analysis of Variance Test for Normality (Complete Samples) , 1965 .
[5] Jun S. Liu,et al. Gibbs motif sampling: Detection of bacterial outer membrane protein repeats , 1995, Protein science : a publication of the Protein Society.
[6] Will Burtin,et al. The story of mathematics , 1968 .
[7] Amin Zia,et al. Towards a theoretical understanding of false positives in DNA motif finding , 2010, BMC Bioinformatics.
[8] Jader C. Garbelini,et al. Discovery Motifs by Evolutionary Computation , 2016, GECCO.
[9] Michael Q. Zhang,et al. SCPD: a promoter database of the yeast Saccharomyces cerevisiae , 1999, Bioinform..
[10] Jun S. Liu,et al. De novo cis-regulatory module elicitation for eukaryotic genomes. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[11] A. Sandelin,et al. Applied bioinformatics for the identification of regulatory elements , 2004, Nature Reviews Genetics.
[12] G. Stormo,et al. Identifying protein-binding sites from unaligned DNA fragments. , 1989, Proceedings of the National Academy of Sciences of the United States of America.
[13] F. Wilcoxon. Individual Comparisons by Ranking Methods , 1945 .
[14] Mauricio G. C. Resende,et al. Greedy Randomized Adaptive Search Procedures , 1995, J. Glob. Optim..
[15] Pierre Hansen,et al. Variable neighborhood search: Principles and applications , 1998, Eur. J. Oper. Res..
[16] Gary D. Stormo,et al. DNA binding sites: representation and discovery , 2000, Bioinform..
[17] Marie-France Sagot,et al. Spelling Approximate Repeated or Common Motifs Using a Suffix Tree , 1998, LATIN.
[18] P. D’haeseleer. What are DNA sequence motifs? , 2006, Nature Biotechnology.
[19] G. K. Sandve,et al. A survey of motif discovery methods in an integrated framework , 2006, Biology Direct.
[20] Wilfred W. Li,et al. MEME: discovering and analyzing DNA and protein sequence motifs , 2006, Nucleic Acids Res..
[21] Erik van Nimwegen,et al. PhyloGibbs: A Gibbs Sampling Motif Finder That Incorporates Phylogeny , 2005, PLoS Comput. Biol..
[22] H. K. Dai,et al. A survey of DNA motif finding algorithms , 2007, BMC Bioinformatics.
[23] André Yoshiaki Kashiwabara,et al. Discovery Biological Motifs Using Heuristics Approaches , 2016, 2016 5th Brazilian Conference on Intelligent Systems (BRACIS).
[24] Juan José Rodríguez Diez,et al. An Experimental Study on Rotation Forest Ensembles , 2007, MCS.
[25] Eric C. Rouchka,et al. Gibbs Recursive Sampler: finding transcription factor binding sites , 2003, Nucleic Acids Res..
[26] William Stafford Noble,et al. Assessing computational tools for the discovery of transcription factor binding sites , 2005, Nature Biotechnology.
[27] Wyeth W. Wasserman,et al. JASPAR: an open-access database for eukaryotic transcription factor binding profiles , 2004, Nucleic Acids Res..
[28] Bin Ma,et al. Finding similar regions in many strings , 1999, STOC '99.
[29] Enrique Blanco,et al. ABS: a database of Annotated regulatory Binding Sites from orthologous promoters , 2005, Nucleic Acids Res..
[30] Matthew W. Hahn,et al. The evolution of transcriptional regulation in eukaryotes. , 2003, Molecular biology and evolution.
[31] Qing Zhou,et al. Modeling within-motif dependence for transcription factor binding site predictions , 2004, Bioinform..
[32] Robert Burgin,et al. Performance Standards and Evaluations in IR Test Collections: Cluster-Based Retrieval Models , 1997, Inf. Process. Manag..
[33] J. Davies,et al. Molecular Biology of the Cell , 1983, Bristol Medico-Chirurgical Journal.
[34] G. Fogel,et al. Discovery of sequence motifs related to coexpression of genes using evolutionary computation. , 2004, Nucleic acids research.
[35] G. Stormo,et al. Additivity in protein-DNA interactions: how good an approximation is it? , 2002, Nucleic acids research.
[36] R. Siddharthan. Dinucleotide Weight Matrices for Predicting Transcription Factor Binding Sites: Generalizing the Position Weight Matrix , 2010, PloS one.
[37] Graziano Pesole,et al. An algorithm for finding signals of unknown length in DNA sequences , 2001, ISMB.
[38] Sean R. Eddy,et al. Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids , 1998 .
[39] Gary D. Stormo,et al. Identifying DNA and protein patterns with statistically significant alignments of multiple sequences , 1999, Bioinform..