OPIC: Ontology-driven Patient Information Capturing System for Epilepsy

The widespread use of paper or document-based forms for capturing patient information in various clinical settings, for example in epilepsy centers, is a critical barrier for large-scale, multi-center research studies that require interoperable, consistent, and error-free data collection. This challenge can be addressed by a web-accessible and flexible patient data capture system that is supported by a common terminological system to facilitate data re-usability, sharing, and integration. We present OPIC, an Ontology-driven Patient Information Capture (OPIC) system that uses a domain-specific epilepsy and seizure ontology (EpSO) to (1) support structured entry of multi-modal epilepsy data, (2) proactively ensure quality of data through use of ontology terms in drop-down menus, and (3) identify and index clinically relevant ontology terms in free-text fields to improve accuracy of subsequent analytical queries (e.g. cohort identification). EpSO, modeled using the Web Ontology Language (OWL), conforms to the recommendations of the International League Against Epilepsy (ILAE) classification and terminological commission. OPIC has been developed using agile software engineering methodology for rapid development cycles in close collaboration with domain expert and end users. We report the result from the initial deployment of OPIC at the University Hospitals Case Medical Center (UH CMC) epilepsy monitoring unit (EMU) as part of the NIH-funded project on Sudden Unexpected Death in Epilepsy (SUDEP). Preliminary user evaluation shows that OPIC has achieved its design objectives to be an intuitive patient information capturing system that also reduces the potential for data entry errors and variability in use of epilepsy terms.

[1]  Allen D. Malony,et al.  Development of NeuroElectroMagnetic ontologies(NEMO): a framework for mining brainwave ontologies , 2007, KDD '07.

[2]  S. Sahoo,et al.  From classification to epilepsy ontology and informatics , 2012, Epilepsia.

[3]  M. Ashburner,et al.  Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.

[4]  Amit P. Sheth,et al.  An ontology-driven semantic mashup of gene and biological pathway information: Application to the domain of nicotine dependence , 2008, J. Biomed. Informatics.

[5]  Linda S. Gottfredson,et al.  Appendix B , 1977, Annals of the ICRP.

[6]  Wei Ma,et al.  RxNorm: prescription for electronic drug information exchange , 2005, IT Professional.

[7]  P. Harris,et al.  Research electronic data capture (REDCap) - A metadata-driven methodology and workflow process for providing translational research informatics support , 2009, J. Biomed. Informatics.

[8]  Olivier Bodenreider,et al.  The Unified Medical Language System (UMLS): integrating biomedical terminology , 2004, Nucleic Acids Res..

[9]  Alan J. Forster,et al.  Electronically screening discharge summaries for adverse medical events. , 2002, Journal of the American Medical Informatics Association : JAMIA.

[10]  Chimezie Ogbuji,et al.  MiDas: automatic extraction of a common domain of discourse in sleep medicine for multi-center data integration. , 2011, AMIA ... Annual Symposium proceedings. AMIA Symposium.

[11]  W GEETS [Classification of epilepsy]. , 1950, Le Scalpel.

[12]  Peter F. Patel-Schneider,et al.  OWL 2 Web Ontology Language , 2009 .

[13]  Olivier Bodenreider,et al.  Investigating subsumption in SNOMED CT: An exploration into large description logic-based biomedical terminologies , 2007, Artif. Intell. Medicine.

[14]  R. Rabadán,et al.  Discovering Disease Associations by Integrating Electronic Clinical Data and Medical Literature , 2011, PloS one.

[15]  José L. V. Mejino,et al.  A reference ontology for biomedical informatics: the Foundational Model of Anatomy , 2003, J. Biomed. Informatics.

[16]  R. Mattson,et al.  Proposal for revised classification of epilepsies and epileptic syndromes. Commission on Classification and Terminology of the International League Against Epilepsy. , 1989, Epilepsia.

[17]  I. Scheffer,et al.  De novo SCN1A mutations in migrating partial seizures of infancy , 2011, Neurology.

[18]  Samden D Lhatoo,et al.  An electroclinical case‐control study of sudden unexpected death in epilepsy , 2010, Annals of neurology.

[19]  J. H. Cross,et al.  Revised terminology and concepts for organization of seizures and epilepsies: Report of the ILAE Commission on Classification and Terminology, 2005–2009 , 2010, Epilepsia.

[20]  Isaac S. Kohane,et al.  Integration of Clinical and Genetic Data in the i2b2 Architecture , 2006, AMIA.

[21]  P. Kellaway,et al.  Proposal for Revised Clinical and Electroencephalographic Classification of Epileptic Seizures , 1981, Epilepsia.