Protein cross-linking analysis using mass spectrometry, isotope-coded cross-linkers, and integrated computational data processing.
暂无分享,去创建一个
Ning Zhang | Ruedi Aebersold | Parag Mallick | James S Eddes | Jan Seebacher | R. Aebersold | M. Gelb | J. Seebacher | P. Mallick | Ning Zhang | J. Eddes | Michael H Gelb
[1] Bill X. Huang,et al. Probing conformational changes of human serum albumin due to unsaturated fatty acid binding by chemical cross-linking and mass spectrometry. , 2005, The Biochemical journal.
[2] Peter R. Baker,et al. Role of accurate mass measurement (+/- 10 ppm) in protein identification strategies employing MS or MS/MS and database searching. , 1999, Analytical chemistry.
[3] C. G. Koster,et al. Computer‐assisted mass spectrometric analysis of naturally occurring and artificially introduced cross‐links in proteins and protein complexes , 2006, The FEBS journal.
[4] Yong Tang,et al. CLPM: A Cross-Linked Peptide Mapping Algorithm for Mass Spectrometric Analysis , 2005, BMC Bioinformatics.
[5] M. Hadi,et al. Influence of crosslinker identity and position on gas-phase dissociation of lys-lys crosslinked peptides , 2006, Journal of the American Society for Mass Spectrometry.
[6] K. Bennett,et al. Probing protein surface topology by chemical surface labeling, crosslinking, and mass spectrometry. , 2000, Methods in molecular biology.
[7] Andrea Sinz,et al. Chemical cross-linking and mass spectrometry to map three-dimensional protein structures and protein-protein interactions. , 2006, Mass spectrometry reviews.
[8] David Fenyö,et al. A modular cross-linking approach for exploring protein interactions. , 2002, Journal of the American Chemical Society.
[9] K N Houk,et al. Quantitative evaluation of the lengths of homobifunctional protein cross‐linking reagents used as molecular rulers , 2001, Protein science : a publication of the Protein Society.
[10] Malin M. Young,et al. High throughput protein fold identification by using experimental constraints derived from intramolecular cross-links and mass spectrometry , 2000, Proc. Natl. Acad. Sci. USA.
[11] R. Guy,et al. Isotopically labeled crosslinking reagents: resolution of mass degeneracy in the identification of crosslinked peptides. , 2003, Bioorganic & medicinal chemistry letters.
[12] A. Sinz. Chemical cross-linking and mass spectrometry for mapping three-dimensional structures of proteins and protein complexes. , 2003, Journal of mass spectrometry : JMS.
[13] J. Brunner,et al. New photolabeling and crosslinking methods. , 1993, Annual review of biochemistry.
[14] S. Kennel,et al. Mass spectrometric detection of affinity purified crosslinked presented , 2004 .
[15] Christoph H Borchers,et al. Isotopically Coded Cleavable Cross-linker for Studying Protein-Protein Interaction and Protein Complexes* , 2005, Molecular & Cellular Proteomics.
[16] M. Mann,et al. A generic strategy to analyze the spatial organization of multi-protein complexes by cross-linking and mass spectrometry. , 2000, Analytical chemistry.
[17] M. Steinmetz,et al. Isotope-tagged cross-linking reagents. A new tool in mass spectrometric protein interaction analysis. , 2001, Analytical chemistry.
[18] B. Séraphin,et al. A generic protein purification method for protein complex characterization and proteome exploration , 1999, Nature Biotechnology.
[19] V. Pingoud,et al. A novel strategy for the identification of protein-DNA contacts by photocrosslinking and mass spectrometry. , 2004, Nucleic acids research.
[20] Chris G de Koster,et al. Chemical cross-linking and mass spectrometry for protein structural modeling. , 2003, Journal of molecular biology.
[21] Chris Bailey-Kellogg,et al. Probabilistic cross‐link analysis and experiment planning for high‐throughput elucidation of protein structure , 2004, Protein science : a publication of the Protein Society.
[22] R. Aebersold,et al. ProbID: A probabilistic algorithm to identify peptides through sequence database searching using tandem mass spectral data , 2002, Proteomics.
[23] Sándor Suhai,et al. Fragmentation Pathways of Protonated Peptides , 2006 .
[24] D. Baker,et al. Computational redesign of protein-protein interaction specificity , 2004, Nature Structural &Molecular Biology.
[25] Birgit Schilling,et al. MS2Assign, automated assignment and nomenclature of tandem mass spectra of chemically crosslinked peptides , 2003, Journal of the American Society for Mass Spectrometry.
[26] E. Birney,et al. The International Protein Index: An integrated database for proteomics experiments , 2004, Proteomics.