Small-molecule activation of OGG1 increases oxidative DNA damage repair by gaining a new function

Oxidative DNA damage is recognized by 8-oxoguanine (8-oxoG) DNA glycosylase 1 (OGG1), which excises 8-oxoG, leaving a substrate for apurinic endonuclease 1 (APE1) and initiating repair. Here, we describe a small molecule (TH10785) that interacts with the phenylalanine-319 and glycine-42 amino acids of OGG1, increases the enzyme activity 10-fold, and generates a previously undescribed β,δ-lyase enzymatic function. TH10785 controls the catalytic activity mediated by a nitrogen base within its molecular structure. In cells, TH10785 increases OGG1 recruitment to and repair of oxidative DNA damage. This alters the repair process, which no longer requires APE1 but instead is dependent on polynucleotide kinase phosphatase (PNKP1) activity. The increased repair of oxidative DNA lesions with a small molecule may have therapeutic applications in various diseases and aging. Description Teaching an enzyme a new trick Small molecules that activate enzymes commonly operate using allosteric control. Michel et al. describe the mode of action of a small-molecule activator that binds to the active site of 8-oxo guanine DNA glycosylase 1 (OGG1) and catalyzes a biochemical reaction not found in the naïve protein. The molecule enables the protein to completely cleave the damaged DNA strand, which results in an overall increased repair of oxidative DNA damage. The underlying creation of a new repair pathway has potential medical application in diseases related to oxidative DNA damage. —DJ A small-molecule activator of a DNA glycolase enzyme generates a new enzymatic function and increases oxidative DNA damage repair.

[1]  F. LaFerla,et al.  MTH1 and OGG1 maintain a low level of 8-oxoguanine in Alzheimer's brain, and prevent the progression of Alzheimer's pathogenesis , 2021, Scientific Reports.

[2]  I. Minko,et al.  Enhanced cytarabine-induced killing in OGG1-deficient acute myeloid leukemia cells , 2021, Proceedings of the National Academy of Sciences.

[3]  A. Dobrzyń,et al.  A Novel Role for the DNA Repair Enzyme 8-Oxoguanine DNA Glycosylase in Adipogenesis , 2021, International journal of molecular sciences.

[4]  J. Benítez,et al.  Small molecule inhibitor of OGG1 blocks oxidative DNA damage repair at telomeres and potentiates methotrexate anticancer effects , 2020, Scientific Reports.

[5]  J. Benítez,et al.  Targeting OGG1 arrests cancer cell proliferation by inducing replication stress , 2020, Nucleic acids research.

[6]  T. Helleday,et al.  OGG1 Inhibitor TH5487 Alters OGG1 Chromatin Dynamics and Prevents Incisions , 2020, Biomolecules.

[7]  V. Band,et al.  Endogenous oxidized DNA bases and APE1 regulate the formation of G-quadruplex structures in the genome , 2020, Proceedings of the National Academy of Sciences.

[8]  J. Bergemann,et al.  The activity of the DNA repair enzyme hOGG1 can be directly modulated by ubiquinol. , 2020, DNA repair.

[9]  E. Sergienko,et al.  Boosting NAD+ with a small molecule that activates NAMPT , 2019, Nature Communications.

[10]  B. Seashore-Ludlow,et al.  Computational and Experimental Druggability Assessment of Human DNA Glycosylases , 2019, ACS omega.

[11]  P. Artursson,et al.  Small-molecule inhibitor of OGG1 suppresses proinflammatory gene expression and inflammation , 2018, Science.

[12]  T. Helleday,et al.  Targeting BER enzymes in cancer therapy. , 2018, DNA repair.

[13]  Shaoyong Lu,et al.  Identification of a cellularly active SIRT6 allosteric activator , 2018, Nature Chemical Biology.

[14]  A. Dobrzyń,et al.  The DNA Repair Protein OGG1 Protects Against Obesity by Altering Mitochondrial Energetics in White Adipose Tissue , 2018, Scientific Reports.

[15]  W. Rumsey,et al.  Enhanced mitochondrial DNA repair of the common disease‐associated variant, Ser326Cys, of hOGG1 through small molecule intervention , 2018, Free radical biology & medicine.

[16]  D. Auld,et al.  Potent and Selective Inhibitors of 8-Oxoguanine DNA Glycosylase. , 2018, Journal of the American Chemical Society.

[17]  P. Srivastava,et al.  Targeting DNA repair with PNKP inhibition sensitizes radioresistant prostate cancer cells to high LET radiation , 2018, PloS one.

[18]  A. Mai,et al.  Structural Basis of Sirtuin 6 Activation by Synthetic Small Molecules. , 2017, Angewandte Chemie.

[19]  R. Lloyd,et al.  Small Molecule Inhibitors of 8-Oxoguanine DNA Glycosylase-1 (OGG1). , 2015, ACS chemical biology.

[20]  P. Nordlund,et al.  The cellular thermal shift assay for evaluating drug target interactions in cells , 2014, Nature Protocols.

[21]  Dudley Lamming,et al.  Evidence for a Common Mechanism of SIRT1 Regulation by Allosteric Activators , 2013, Science.

[22]  Jie Wu,et al.  An efficient route to 1-aminoisoquinolines via AgOTf-catalyzed reaction of 2-alkynylbenzaldoxime with amine. , 2011, Organic & biomolecular chemistry.

[23]  M. Salas,et al.  Editing of misaligned 3′-termini by an intrinsic 3′–5′ exonuclease activity residing in the PHP domain of a family X DNA polymerase , 2008, Nucleic acids research.

[24]  D. Boger,et al.  A fluorescent intercalator displacement assay for establishing DNA binding selectivity and affinity. , 2004, Accounts of chemical research.

[25]  J. Christopher Fromme,et al.  Product-assisted catalysis in base-excision DNA repair , 2003, Nature Structural Biology.

[26]  A. Grollman,et al.  Cloning and characterization of a mammalian 8-oxoguanine DNA glycosylase. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[27]  S. Wallace,et al.  A novel, sensitive, and specific assay for abasic sites, the most commonly produced DNA lesion. , 1992, Biochemistry.