Wide-Area Shape Reconstruction by 3D Endoscopic System Based on CNN Decoding, Shape Registration and Fusion

For effective in situ endoscopic diagnosis and treatment, dense and large areal shape reconstruction is important. For this purpose, we develop 3D endoscopic systems based on active stereo, which projects a grid pattern where grid points are coded by line gaps. One problem of the previous works was that success or failure of 3D reconstruction depends on the stability of feature extraction from the images captured by the endoscope camera. Subsurface scattering or specularities on bio-tissues make this problem difficult. Another problem was that shape reconstruction area was relatively small because of limited field of view of the pattern projector compared to that of the camera. In this paper, to solve the first problem, learning-based approach, i.e., U-Nets, for efficient detection of grid lines and codes at the detected grid points under severe conditions, is proposed. To solve the second problem, an online shape-registration and merging algorithm for sequential frames is proposed. In the experiments, we have shown that we can train U-Nets to extract those features effectively for three specimens of cancers, and also conducted 3D scanning of shapes of a stomach phantom model and a surface inside a human mouth, in which wide-area surfaces are successfully recovered by shape registration and merging.

[1]  Shinji Tanaka,et al.  Proposal on 3-D endoscope by using grid-based active stereo , 2013, 2013 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC).

[2]  J. M. M. Montiel,et al.  Visual SLAM for Handheld Monocular Endoscope , 2014, IEEE Transactions on Medical Imaging.

[3]  Guang-Zhong Yang,et al.  Metric depth recovery from monocular images using Shape-from-Shading and specularities , 2012, 2012 19th IEEE International Conference on Image Processing.

[4]  Shinji Tanaka,et al.  Shape Acquisition and Registration for 3D Endoscope Based on Grid Pattern Projection , 2016, ECCV.

[5]  Richard K. Beatson,et al.  Surface interpolation with radial basis functions for medical imaging , 1997, IEEE Transactions on Medical Imaging.

[6]  Andrew W. Fitzgibbon,et al.  KinectFusion: Real-time dense surface mapping and tracking , 2011, 2011 10th IEEE International Symposium on Mixed and Augmented Reality.

[7]  Guang-Zhong Yang,et al.  Real-Time Stereo Reconstruction in Robotically Assisted Minimally Invasive Surgery , 2010, MICCAI.

[8]  Danail Stoyanov,et al.  Tissue Surface Reconstruction Aided by Local Normal Information Using a Self-calibrated Endoscopic Structured Light System , 2015, MICCAI.

[9]  Masashi Baba,et al.  2-DOF auto-calibration for a 3D endoscope system based on active stereo , 2015, 2015 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC).

[10]  Marc Levoy,et al.  A volumetric method for building complex models from range images , 1996, SIGGRAPH.

[11]  Thomas Brox,et al.  U-Net: Convolutional Networks for Biomedical Image Segmentation , 2015, MICCAI.

[12]  Paul J. Besl,et al.  A Method for Registration of 3-D Shapes , 1992, IEEE Trans. Pattern Anal. Mach. Intell..

[13]  Shinji Tanaka,et al.  3D endoscope system using DOE projector , 2016, 2016 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC).

[14]  Radu Bogdan Rusu,et al.  3D is here: Point Cloud Library (PCL) , 2011, 2011 IEEE International Conference on Robotics and Automation.

[15]  Shinji Tanaka,et al.  Calibration of a 3D endoscopic system based on active stereo method for shape measurement of biological tissues and specimen , 2014, 2014 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society.