Optimizing Shotgun Proteomics Analysis for a Confident Protein Identification and Quantitation in Orphan Plant Species: The Case of Holm Oak (Quercus ilex).

[1]  D. R. Hoagland,et al.  The Water-Culture Method for Growing Plants Without Soil , 2018 .

[2]  J. Jorrín-Novo,et al.  Holm Oak (Quercus ilex) Transcriptome. De novo Sequencing and Assembly Analysis , 2017, Front. Mol. Biosci..

[3]  L. Valledor,et al.  Improving the quality of protein identification in non-model species. Characterization of Quercus ilex seed and Pinus radiata needle proteomes by using SEQUEST and custom databases. , 2014, Journal of proteomics.

[4]  Tao Liu,et al.  Liquid Chromatography-Mass Spectrometry-based Quantitative Proteomics* , 2011, The Journal of Biological Chemistry.

[5]  Z. Pan,et al.  Intranasal Immunization with Chitosan/pCAGGS-flaA Nanoparticles Inhibits Campylobacter jejuni in a White Leghorn Model , 2010, Journal of biomedicine & biotechnology.

[6]  Jeffrey W. Smith,et al.  Mass Spectrometry-Based Label-Free Quantitative Proteomics , 2009, Journal of biomedicine & biotechnology.

[7]  Wei Wang,et al.  A universal and rapid protocol for protein extraction from recalcitrant plant tissues for proteomic analysis , 2006, Electrophoresis.

[8]  J. Joyard,et al.  Focus on plant proteomics. , 2004, Plant physiology and biochemistry : PPB.

[9]  F. Cánovas,et al.  Plant proteome analysis , 2004, Proteomics.

[10]  M. M. Bradford A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. , 1976, Analytical biochemistry.

[11]  J. Jorrín-Novo,et al.  Plant Proteomics: Methods and Protocols , 2020, Methods in Molecular Biology.

[12]  Jesus V Jorrin-Novo,et al.  Standardization of data processing and statistical analysis in comparative plant proteomics experiment. , 2014, Methods in molecular biology.

[13]  W. Weckwerth,et al.  An improved detergent-compatible gel-fractionation LC-LTQ-Orbitrap-MS workflow for plant and microbial proteomics. , 2014, Methods in molecular biology.

[14]  V. Neuhoff,et al.  Improved staining of proteins in polyacrylamide gels including isoelectric focusing gels with clear background at nanogram sensitivity using Coomassie Brilliant Blue G‐250 and R‐250 , 1988, Electrophoresis.