The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition
暂无分享,去创建一个
Juan Antonio Vizcaíno | Henning Hermjakob | Eric W. Deutsch | Tobias Ternent | Nuno Bandeira | Shujiro Okuda | Mingxun Wang | Andrew F. Jarnuczak | Andrew Jarnuczak | Shin Kawano | Yasushi Ishihama | Zhi Sun | Manuel Bernal Llinares | David S. Campbell | Robert L. Moritz | Attila Csordas | Yasset Pérez-Riverol | Jeremy J. Carver | Jeremy Carver | Shujiro Okuda | R. Moritz | H. Hermjakob | E. Deutsch | D. Campbell | Y. Ishihama | J. Vizcaíno | A. Csordas | Zhi Sun | N. Bandeira | S. Kawano | Mingxun Wang | Yasset Pérez-Riverol | Tobias Ternent | Jeremy Carver
[1] Andrew R. Jones,et al. ProteomeXchange provides globally co-ordinated proteomics data submission and dissemination , 2014, Nature Biotechnology.
[2] Juan Antonio Vizcaíno,et al. From Peptidome to PRIDE: Public proteomics data migration at a large scale , 2013, Proteomics.
[3] Lennart Martens,et al. Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 2.1. , 2016, Journal of proteome research.
[4] B. Kuster,et al. Mass-spectrometry-based draft of the human proteome , 2014, Nature.
[5] J. Vizcaíno,et al. Exploring the potential of public proteomics data , 2015, Proteomics.
[6] Vineet Bafna,et al. Advanced Proteogenomic Analysis Reveals Multiple Peptide Mutations and Complex Immunoglobulin Peptides in Colon Cancer. , 2015, Journal of proteome research.
[7] G. Cochrane,et al. The International Nucleotide Sequence Database Collaboration , 2011, Nucleic Acids Res..
[8] Steven A. Carr,et al. On Credibility, Clarity, and Compliance , 2015, Molecular & Cellular Proteomics.
[9] Gary D Bader,et al. A draft map of the human proteome , 2014, Nature.
[10] Eunok Paek,et al. Fast Multi-blind Modification Search through Tandem Mass Spectrometry* , 2011, Molecular & Cellular Proteomics.
[11] Yasset Perez-Riverol,et al. Open source libraries and frameworks for mass spectrometry based proteomics: A developer's perspective , 2014, Biochimica et biophysica acta.
[12] Pavel A. Pevzner,et al. Universal database search tool for proteomics , 2014, Nature Communications.
[13] Lennart Martens,et al. PRIDE Inspector: a tool to visualize and validate MS proteomics data , 2011, Nature Biotechnology.
[14] Haruki Nakamura,et al. The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data , 2006, Nucleic Acids Res..
[15] Juan Antonio Vizcaíno,et al. A public repository for mass spectrometry imaging data , 2014, Analytical and Bioanalytical Chemistry.
[16] Robertson Craig,et al. Open source system for analyzing, validating, and storing protein identification data. , 2004, Journal of proteome research.
[17] Martin Eisenacher,et al. Development of data representation standards by the human proteome organization proteomics standards initiative , 2015, J. Am. Medical Informatics Assoc..
[18] Martin Eisenacher,et al. PRIDE Inspector Toolsuite: Moving Toward a Universal Visualization Tool for Proteomics Data Standard Formats and Quality Assessment of ProteomeXchange Datasets , 2015, Molecular & Cellular Proteomics.
[19] Jian Wang,et al. MSPLIT-DIA: sensitive peptide identification for data-independent acquisition , 2015, Nature Methods.
[20] Samuel H Payne,et al. Multi-species Identification of Polymorphic Peptide Variants via Propagation in Spectral Networks* , 2016, Molecular & Cellular Proteomics.
[21] Martin Eisenacher,et al. The mzIdentML Data Standard for Mass Spectrometry-Based Proteomics Results , 2012, Molecular & Cellular Proteomics.
[22] Kristian Fog Nielsen,et al. Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking , 2016, Nature Biotechnology.
[23] Jun Fan,et al. The mzTab Data Exchange Format: Communicating Mass-spectrometry-based Proteomics and Metabolomics Experimental Results to a Wider Audience* , 2014, Molecular & Cellular Proteomics.
[24] Guy Cochrane,et al. The International Nucleotide Sequence Database Collaboration , 2011, Nucleic Acids Res..
[25] Lennart Martens,et al. mzML—a Community Standard for Mass Spectrometry Data* , 2010, Molecular & Cellular Proteomics.
[26] José A. Dianes,et al. 2016 update of the PRIDE database and its related tools , 2016, Nucleic Acids Res..
[27] Luis Mendoza,et al. PASSEL: The PeptideAtlas SRMexperiment library , 2012, Proteomics.
[28] Henry H. N. Lam,et al. PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows , 2008, EMBO reports.
[29] Yasset Perez-Riverol,et al. Making proteomics data accessible and reusable: Current state of proteomics databases and repositories , 2015, Proteomics.
[30] P. Mallick,et al. Peptide Identification from Mixture Tandem Mass Spectra* , 2010, Molecular & Cellular Proteomics.