Molecular mechanism of membrane recruitment of GGA by ARF in lysosomal protein transport

GGAs are critical for trafficking soluble proteins from the trans-Golgi network (TGN) to endosomes/lysosomes through interactions with TGN-sorting receptors, ADP-ribosylation factor (ARF) and clathrin. ARF–GTP bound to TGN membranes recruits its effector GGA by binding to the GAT domain, thus facilitating recognition of GGA for cargo-loaded receptors. Here we report the X-ray crystal structures of the human GGA1-GAT domain and the complex between ARF1–GTP and the N-terminal region of the GAT domain. When unbound, the GAT domain forms an elongated bundle of three a-helices with a hydrophobic core. Structurally, this domain, combined with the preceding VHS domain, resembles CALM, an AP180 homolog involved in endocytosis. In the complex with ARF1–GTP, a helix-loop-helix of the N-terminal part of GGA1-GAT interacts with the switches 1 and 2 of ARF1 predominantly in a hydrophobic manner. These data reveal a molecular mechanism underlying membrane recruitment of adaptor proteins by ARF–GTP.

[1]  G. Murshudov,et al.  Refinement of macromolecular structures by the maximum-likelihood method. , 1997, Acta crystallographica. Section D, Biological crystallography.

[2]  S. Kornfeld,et al.  Autoinhibition of the ligand-binding site of GGA1/3 VHS domains by an internal acidic cluster-dileucine motif , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[3]  R. Kahn,et al.  Effects of Activated ADP-ribosylation Factors on Golgi Morphology Require neither Activation of Phospholipase D1 nor Recruitment of Coatomer* , 2000, The Journal of Biological Chemistry.

[4]  J. Bonifacino,et al.  Structural basis for acidic-cluster-dileucine sorting-signal recognition by VHS domains , 2002, Nature.

[5]  Thomas C. Terwilliger,et al.  Electronic Reprint Biological Crystallography Maximum-likelihood Density Modification , 2022 .

[6]  H. Geuze,et al.  Cooperation of GGAs and AP-1 in Packaging MPRs at the Trans-Golgi Network , 2002, Science.

[7]  O. Lohi,et al.  Vear, a novel Golgi-associated protein with VHS and gamma-adaptin "ear" domains. , 2000, The Journal of biological chemistry.

[8]  J. Goldberg,et al.  Structural Basis for Activation of ARF GTPase Mechanisms of Guanine Nucleotide Exchange and GTP–Myristoyl Switching , 1998, Cell.

[9]  Thomas Earnest,et al.  Structural basis for recognition of acidic-cluster dileucine sequence by GGA1 , 2002, Nature.

[10]  D. Owen,et al.  The structure of the GGA1-GAT domain reveals the molecular basis for ARF binding and membrane association of GGAs. , 2003, Developmental cell.

[11]  P. Madsen,et al.  The sortilin cytoplasmic tail conveys Golgi–endosome transport and binds the VHS domain of the GGA2 sorting protein , 2001, The EMBO journal.

[12]  K. Nakayama,et al.  Adaptor γ Ear Homology Domain Conserved in γ-Adaptin and GGA Proteins That Interact with γ-Synergin , 2000 .

[13]  P R Evans,et al.  Simultaneous binding of PtdIns(4,5)P2 and clathrin by AP180 in the nucleation of clathrin lattices on membranes. , 2001, Science.

[14]  E A Merritt,et al.  Raster3D: photorealistic molecular graphics. , 1997, Methods in enzymology.

[15]  N. Sreerama,et al.  A self-consistent method for the analysis of protein secondary structure from circular dichroism. , 1993, Analytical biochemistry.

[16]  J. Bonifacino,et al.  Sorting of Mannose 6-Phosphate Receptors Mediated by the GGAs , 2001, Science.

[17]  F. Quiocho,et al.  A Novel All Helix Fold of the AP180 Amino-Terminal Domain for Phosphoinositide Binding and Clathrin Assembly in Synaptic Vesicle Endocytosis , 2001, Cell.

[18]  K. Nakayama,et al.  Golgi-localizing, γ-Adaptin Ear Homology Domain, ADP-ribosylation Factor-binding (GGA) Proteins Interact with Acidic Dileucine Sequences within the Cytoplasmic Domains of Sorting Receptors through Their Vps27p/Hrs/STAM (VHS) Domains* , 2001, The Journal of Biological Chemistry.

[19]  M. Robinson,et al.  A Family of Proteins with γ-Adaptin and Vhs Domains That Facilitate Trafficking between the Trans-Golgi Network and the Vacuole/Lysosome , 2000, The Journal of cell biology.

[20]  J. Bonifacino,et al.  The GGAs Promote ARF-Dependent Recruitment of Clathrin to the TGN , 2001, Cell.

[21]  J. Bonifacino,et al.  Adaptor-related proteins. , 2001, Current opinion in cell biology.

[22]  O. Zhdankina,et al.  Yeast GGA proteins interact with GTP‐bound Arf and facilitate transport through the Golgi , 2001, Yeast.

[23]  R J Read,et al.  Crystallography & NMR system: A new software suite for macromolecular structure determination. , 1998, Acta crystallographica. Section D, Biological crystallography.

[24]  Anastassis Perrakis,et al.  Automated protein model building combined with iterative structure refinement , 1999, Nature Structural Biology.

[25]  D. Hirsch,et al.  Arf1 Dissociates from the Clathrin Adaptor GGA Prior to Being Inactivated by Arf GTPase-activating Proteins* , 2002, The Journal of Biological Chemistry.

[26]  V. Lehto,et al.  Binding of GGA2 to the Lysosomal Enzyme Sorting Motif of the Mannose 6-Phosphate Receptor , 2001, Science.

[27]  K. Nakayama,et al.  GGA proteins associate with Golgi membranes through interaction between their GGAH domains and ADP-ribosylation factors. , 2002, The Biochemical journal.

[28]  J. Navaza,et al.  AMoRe: an automated package for molecular replacement , 1994 .

[29]  R. Kahn,et al.  A family of ADP-ribosylation factor effectors that can alter membrane transport through the trans-Golgi. , 2000, Molecular biology of the cell.

[30]  J. Bonifacino,et al.  GGAs: a family of ADP ribosylation factor-binding proteins related to adaptors and associated with the Golgi complex. , 2000, The Journal of cell biology.

[31]  M. Lawrence,et al.  CONSCRIPT: a program for generating electron density isosurfaces for presentation in protein crystallography , 2000 .

[32]  A. Wittinghofer,et al.  The complex of Arl2-GTP and PDE delta: from structure to function. , 2002, The EMBO journal.

[33]  J. Goldberg Structural and Functional Analysis of the ARF1–ARFGAP Complex Reveals a Role for Coatomer in GTP Hydrolysis , 1999, Cell.

[34]  Thomas C. Terwilliger,et al.  Automated MAD and MIR structure solution , 1999, Acta crystallographica. Section D, Biological crystallography.

[35]  P. Kraulis A program to produce both detailed and schematic plots of protein structures , 1991 .