Comparison of normal mode analyses on a small globular protein in dihedral angle space and Cartesian coordinate space.
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[1] Carl Eckart,et al. Some Studies Concerning Rotating Axes and Polyatomic Molecules , 1935 .
[2] H. Scheraga,et al. Energy parameters in polypeptides. VII. Geometric parameters, partial atomic charges, nonbonded interactions, hydrogen bond interactions, and intrinsic torsional potentials for the naturally occurring amino acids , 1975 .
[3] Tosiyuki Noguti,et al. Dynamics of Native Globular Proteins in Terms of Dihedral Angles , 1983 .
[4] R. Huber,et al. The Geometry of the Reactive Site and of the Peptide Groups in Trypsin, Trypsinogen and its Complexes with Inhibitors , 1983 .
[5] P. Kollman,et al. An all atom force field for simulations of proteins and nucleic acids , 1986, Journal of computational chemistry.
[6] W. L. Jorgensen,et al. The OPLS [optimized potentials for liquid simulations] potential functions for proteins, energy minimizations for crystals of cyclic peptides and crambin. , 1988, Journal of the American Chemical Society.
[7] David A. Case,et al. Harmonic and quasiharmonic descriptions of crambin , 1990 .
[8] N Go,et al. Projection of monte carlo and molecular dynamics trajectories onto the normal mode axes: Human lysozyme , 1991, Proteins.
[9] Akio Kitao,et al. Conformational dynamics of polypeptides and proteins in the dihedral angle space and in the cartesian coordinate space: Normal mode analysis of deca‐alanine , 1991 .
[10] Fumio Hirata,et al. The effects of solvent on the conformation and the collective motions of protein: normal mode analysis and molecular dynamics simulations of melittin in water and in vacuum , 1991 .
[11] N Go,et al. Normal mode refinement: crystallographic refinement of protein dynamic structure. II. Application to human lysozyme. , 1992, Journal of molecular biology.
[12] N. Go,et al. Effect of solvent on collective motions in globular protein. , 1993, Journal of molecular biology.
[13] H. Berendsen,et al. Essential dynamics of proteins , 1993, Proteins.
[14] A Kitao,et al. Harmonic and anharmonic aspects in the dynamics of BPTI: A normal mode analysis and principal component analysis , 1994, Protein science : a publication of the Protein Society.