A bacterial genome in flux: the twelve linear and nine circular extrachromosomal DNAs in an infectious isolate of the Lyme disease spirochete Borrelia burgdorferi
暂无分享,去创建一个
O. White | G. Sutton | J. Peterson | D. Haft | R. Dodson | M. Gwinn | E. Hickey | S. Casjens | R. Lathigra | Nanette M Palmer | B. Stevenson | P. Rosa | R. van Vugt | Wai Mun Huang | Claire M. Fraser
[1] S. Casjens. Evolution of the linear DNA replicons of the Borrelia spirochetes. , 1999, Current opinion in microbiology.
[2] A. Barbour,et al. Comparative Analysis and Immunological Characterization of the Borrelia Bdr Protein Family , 1999, Infection and Immunity.
[3] B. Stevenson,et al. Stability of erp Loci duringBorrelia burgdorferi Infection: Recombination Is Not Required for Chronic Infection of Immunocompetent Mice , 1999, Infection and Immunity.
[4] J. Radolf,et al. Molecular and Evolutionary Analysis ofBorrelia burgdorferi 297 Circular Plasmid-Encoded Lipoproteins with OspE- and OspF-Like Leader Peptides , 1999, Infection and Immunity.
[5] Benjamin L. King,et al. Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori , 1999, Nature.
[6] Barbara J. B. Johnson,et al. Identification of a 47 kDa fibronectin‐binding protein expressed by Borrelia burgdorferi isolate B31 , 1998, Molecular microbiology.
[7] G. Baranton,et al. Expanded Diversity among CalifornianBorrelia Isolates and Description of Borrelia bissettii sp. nov. (Formerly Borrelia Group DN127) , 1998, Journal of Clinical Microbiology.
[8] K. H. Wolfe,et al. Base Composition Skews, Replication Orientation, and Gene Orientation in 12 Prokaryote Genomes , 1998, Journal of Molecular Evolution.
[9] T. Sicheritz-Pontén,et al. The genome sequence of Rickettsia prowazekii and the origin of mitochondria , 1998, Nature.
[10] R. Wirtz,et al. An experimental chain of infection reveals that distinct Borrelia burgdorferi populations are selected in arthropod and mammalian hosts , 1998, Molecular microbiology.
[11] S. Norris,et al. Genetic Variation of the Borrelia burgdorferi Gene vlsE Involves Cassette-Specific, Segmental Gene Conversion , 1998, Infection and Immunity.
[12] S. Salzberg,et al. Complete genome sequence of Treponema pallidum, the syphilis spirochete. , 1998, Science.
[13] S. Casjens,et al. Evidence of past recombination events among the genes encoding the Erp antigens of Borrelia burgdorferi. , 1998, Microbiology.
[14] B. Barrell,et al. Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence , 1998, Nature.
[15] J. Bono,et al. Borrelia burgdorferi Erp Proteins Are Immunogenic in Mammals Infected by Tick Bite, and Their Synthesis Is Inducible in Cultured Bacteria , 1998, Infection and Immunity.
[16] S. Barthold,et al. Humoral Immunity to Borrelia burgdorferiN40 Decorin Binding Proteins during Infection of Laboratory Mice , 1998, Infection and Immunity.
[17] J. Bono,et al. Oligopeptide permease in Borrelia burgdorferi: putative peptide-binding components encoded by both chromosomal and plasmid loci. , 1998, Microbiology.
[18] K. Cornell,et al. Cloning and expression of Escherichia coli 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase: identification of the pfs gene product. , 1998, Biochimica et biophysica acta.
[19] Guiqing Wang,et al. Molecular Typing of Borrelia burgdorferiSensu Lato by Randomly Amplified Polymorphic DNA Fingerprinting Analysis , 1998, Journal of Clinical Microbiology.
[20] F. Myouga,et al. Genetic and immunological analyses of Vls (VMP-like sequences) of Borrelia burgdorferi. , 1998, Microbial pathogenesis.
[21] J. Peden,et al. Simple sequence repeats in the Helicobacter pylori genome , 1998, Molecular microbiology.
[22] J. Carlyon,et al. Analysis of the Organization of Multicopy Linear- and Circular-Plasmid-Carried Open Reading Frames inBorrelia burgdorferi Sensu Lato Isolates , 1998, Infection and Immunity.
[23] M. Mbow,et al. A Monoclonal Antibody Generated by Antigen Inoculation via Tick Bite Is Reactive to the Borrelia burgdorferi Rev Protein, a Member of the 2.9 Gene Family Locus , 1998, Infection and Immunity.
[24] D. Walker,et al. Tick-transmitted infectious diseases in the United States. , 1998, Annual review of public health.
[25] Sean R. Eddy,et al. Profile hidden Markov models , 1998, Bioinform..
[26] D. Oliver,et al. Lyme disease-causing Borrelia species encode multiple lipoproteins homologous to peptide-binding proteins of ABC-type transporters. , 1998, Infection and immunity.
[27] S. Casjens,et al. The diverse and dynamic structure of bacterial genomes. , 1998, Annual review of genetics.
[28] S. Salzberg,et al. Microbial gene identification using interpolated Markov models. , 1998, Nucleic acids research.
[29] M. Schuttler,et al. Cloning and sequencing of a species-specific nucleotide fragment of Borrelia burgdorferi sensu stricto, which is repeated in several plasmids of the species. , 2006, FEMS microbiology letters.
[30] S. Salzberg,et al. Genomic sequence of a Lyme disease spirochaete, Borrelia burgdorferi , 1997, Nature.
[31] D. van Sinderen,et al. Sequence analysis and characterization of phi O1205, a temperate bacteriophage infecting Streptococcus thermophilus CNRZ1205. , 1997, Microbiology.
[32] S. Casjens,et al. Telomeres of the linear chromosomes of Lyme disease spirochaetes: nucleotide sequence and possible exchange with linear plasmid telomeres , 1997, Molecular microbiology.
[33] Boer,et al. Genetic and phenotypic analysis of Borrelia valaisiana sp. nov. (Borrelia genomic groups VS116 and M19). , 1997, International journal of systematic bacteriology.
[34] G. Baranton,et al. Characterization of Borrelia lusitaniae sp. nov. by 16S ribosomal DNA sequence analysis. , 1997, International journal of systematic bacteriology.
[35] N. W. Davis,et al. The complete genome sequence of Escherichia coli K-12. , 1997, Science.
[36] Thomas L. Madden,et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. , 1997, Nucleic acids research.
[37] Y. Yanagihara,et al. Deletion in the Genes Encoding Outer Surface Proteins OspA and OspB of Borrelia garinii Isolated from Patients in Japan , 1997, Microbiology and immunology.
[38] L. Hedstrom,et al. Expression, Purification, and Characterization of Inosine 5′-Monophosphate Dehydrogenase from Borrelia burgdorferi * , 1997, The Journal of Biological Chemistry.
[39] Mark Borodovsky,et al. The complete genome sequence of the gastric pathogen Helicobacter pylori , 1997, Nature.
[40] K Falls,et al. Multiplex sequencing of 1.5 Mb of the Mycobacterium leprae genome. , 1997, Genome research.
[41] J. Bono,et al. The Borrelia burgdorferi circular plasmid cp26: conservation of plasmid structure and targeted inactivation of the ospC gene , 1997, Molecular microbiology.
[42] J. Bono,et al. Characterization of cp18, a naturally truncated member of the cp32 family of Borrelia burgdorferi plasmids , 1997, Journal of bacteriology.
[43] T. Guina,et al. Cloning and analysis of a Borrelia burgdorferi membrane‐interactive protein exhibiting haemolytic activity , 1997, Molecular microbiology.
[44] M. Schuttler,et al. Cloning and sequencing of a species-specific nucleotide fragment of sensu stricto, which is repeated in several plasmids of the species , 1997 .
[45] S. Norris,et al. Antigenic Variation in Lyme Disease Borreliae by Promiscuous Recombination of VMP-like Sequence Cassettes , 1997, Cell.
[46] H. Ochman,et al. Amelioration of Bacterial Genomes: Rates of Change and Exchange , 1997, Journal of Molecular Evolution.
[47] P. Rosa. Microbiology of Borrelia burgdorferi , 1997, Seminars in neurology.
[48] S. Casjens,et al. Homology throughout the multiple 32-kilobase circular plasmids present in Lyme disease spirochetes , 1997, Journal of bacteriology.
[49] B. Johnson,et al. Molecular characterization of a 35-kilodalton protein of Borrelia burgdorferi, an antigen of diagnostic importance in early Lyme disease , 1997, Journal of clinical microbiology.
[50] S. Telford,et al. Genetic heterogeneity of Borrelia burgdorferi in the United States. , 1997, The Journal of infectious diseases.
[51] A. Barbour,et al. The nucleotide sequence of a linear plasmid of Borrelia burgdorferi reveals similarities to those of circular plasmids of other prokaryotes , 1996, Journal of bacteriology.
[52] S. Cole,et al. Gene arrangement and organization in a ~ 76 kb fragment encompassing the oriC region of the chromosome of Mycobacterium leprae , 1996 .
[53] M. Nakao,et al. Borrelia tanukii Sp. Nov. and Borrelia turdae Sp. Nov. Found from Ixodid Ticks in Japan: Rapid Species Identification by 16S rRNA Gene‐Targeted PCR Analysis , 1996, Microbiology and immunology.
[54] M. Theisen. Molecular cloning and characterization of nlpH, encoding a novel, surface-exposed, polymorphic, plasmid-encoded 33-kilodalton lipoprotein of Borrelia afzelii , 1996, Journal of bacteriology.
[55] J. Carlyon,et al. Molecular and evolutionary analyses of a variable series of genes in Borrelia burgdorferi that are related to ospE and ospF, constitute a gene family, and share a common upstream homology box , 1996, Journal of bacteriology.
[56] R. C. Johnson,et al. Correlation of plasmids with infectivity of Borrelia burgdorferi sensu stricto type strain B31 , 1996, Infection and immunity.
[57] H. Erdjument-Bromage,et al. Porin activity of the native and recombinant outer membrane protein Oms28 of Borrelia burgdorferi , 1996, Journal of bacteriology.
[58] E. Fikrig,et al. Characterization of two genes, p11 and p5, on the Borrelia burgdorferi 49-kilo base linear plasmid. , 1996, Biochimica et Biophysica Acta.
[59] M. Li,et al. Borrelia burgdorferi supercoiled plasmids encode multicopy tandem open reading frames and a lipoprotein gene family , 1996, Journal of bacteriology.
[60] B. Stevenson,et al. A family of genes located on four separate 32-kilobase circular plasmids in Borrelia burgdorferi B31 , 1996, Journal of bacteriology.
[61] S. Casjens,et al. Analysis of linear plasmid dimers in Borrelia burgdorferi sensu lato isolates: implications concerning the potential mechanism of linear plasmid replication , 1996, Journal of bacteriology.
[62] H. Nitschko,et al. Three species of Borrelia burgdorferi sensu lato (B. burgdorferi sensu stricto, B afzelii, and B. garinii) identified from cerebrospinal fluid isolates by pulsed-field gel electrophoresis and PCR , 1996, Journal of clinical microbiology.
[63] W. Zückert,et al. Circular and linear plasmids of Lyme disease spirochetes have extensive homology: characterization of a repeated DNA element , 1996, Journal of bacteriology.
[64] E. Fikrig,et al. Novel Borrelia burgdorferi isolates from Ixodes scapularis and Ixodes dentatus ticks feeding on humans , 1996, Journal of clinical microbiology.
[65] D. Dykhuizen,et al. Multiple infections of Ixodes scapularis ticks by Borrelia burgdorferi as revealed by single-strand conformation polymorphism analysis , 1996, Journal of clinical microbiology.
[66] S. Norris,et al. Conversion of a linear to a circular plasmid in the relapsing fever agent Borrelia hermsii , 1996, Journal of bacteriology.
[67] N. Moran,et al. The endosymbiont (Buchnera sp.) of the aphid Diuraphis noxia contains plasmids consisting of trpEG and tandem repeats of trpEG pseudogenes , 1996, Applied and environmental microbiology.
[68] S. Cole,et al. Gene arrangement and organization in a approximately 76 kb fragment encompassing the oriC region of the chromosome of Mycobacterium leprae. , 1996, Microbiology.
[69] J. F. Atkins,et al. Recoding: dynamic reprogramming of translation. , 1996, Annual review of biochemistry.
[70] S. Malawista,et al. An ospA frame shift, identified from DNA in Lyme arthritis synovial fluid, results in an outer surface protein A that does not bind protective antibodies. , 1995, Journal of immunology.
[71] R. Fleischmann,et al. The Minimal Gene Complement of Mycoplasma genitalium , 1995, Science.
[72] M. Katz,et al. A role for bacteriophages in the evolution and transfer of bacterial virulence determinants , 1995, Molecular microbiology.
[73] R. C. Johnson,et al. Analysis and comparison of plasmid profiles of Borrelia burgdorferi sensu lato strains , 1995, Journal of clinical microbiology.
[74] F. Dorner,et al. Evidence for lateral transfer and recombination in OspC variation in Lyme disease Borrelia , 1995, Molecular microbiology.
[75] H. Kamata,et al. A novel insertion sequence (IS)-like element of the thermophilic bacterium PS3 promotes expression of the alanine carrier protein-encoding gene. , 1995, Gene.
[76] M. Fukunaga,et al. Outer surface protein C gene sequence analysis of Borrelia burgdorferi sensu lato isolates from Japan , 1995, Journal of clinical microbiology.
[77] R. Fleischmann,et al. Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. , 1995, Science.
[78] E. Soutschek,et al. Molecular analysis of genes encoding outer surface protein C (OspC) of Borrelia burgdorferi sensu lato: relationship to ospA genotype and evidence of lateral gene exchange of ospC , 1995, Journal of clinical microbiology.
[79] D. Saul,et al. Correction of the beta-mannanase domain of the celC pseudogene from Caldocellulosiruptor saccharolyticus and activity of the gene product on kraft pulp , 1995, Applied and environmental microbiology.
[80] S. Norris,et al. High- and low-infectivity phenotypes of clonal populations of in vitro-cultured Borrelia burgdorferi , 1995, Infection and immunity.
[81] R. Beabealashvilli,et al. Mycoplasma gallisepticum 16S rRNA genes. , 1995, FEMS microbiology letters.
[82] S. Casjens,et al. Linear chromosomes of Lyme disease agent spirochetes: genetic diversity and conservation of gene order , 1995, Journal of bacteriology.
[83] E. Fikrig,et al. Selection of variant Borrelia burgdorferi isolates from mice immunized with outer surface protein A or B , 1995, Infection and immunity.
[84] I. Sutcliffe,et al. Lipoproteins of gram-positive bacteria , 1995, Journal of bacteriology.
[85] R. C. Johnson,et al. Phenotypic analysis of outer surface protein C (OspC) of Borrelia burgdorferi sensu lato by monoclonal antibodies: relationship to genospecies and OspA serotype , 1995, Journal of clinical microbiology.
[86] B. Wilske,et al. Molecular characterization of Borrelia burgdorferi sensu lato strains by pulsed‐field gel electrophoresis , 1995, Electrophoresis.
[87] S. Barthold,et al. Expression and sequence of outer surface protein C among North American isolates of Borrelia burgdorferi. , 1994, FEMS microbiology letters.
[88] Manuel G. Claros,et al. TopPred II: an improved software for membrane protein structure predictions , 1994, Comput. Appl. Biosci..
[89] P. Rosa,et al. Plasmid location of Borrelia purine biosynthesis gene homologs , 1994, Journal of bacteriology.
[90] B. E. Davidson,et al. Conservation of gene arrangement and an unusual organization of rRNA genes in the linear chromosomes of the Lyme disease spirochaetes Borrelia burgdorferi, B. garinii and B. afzelii. , 1994, Microbiology.
[91] A. Barbour,et al. Antigen diversity in the bacterium B. hermsii through “Somatic” mutations in rearranged vmp genes , 1994, Cell.
[92] D. Persing,et al. Genetic stability of Borrelia burgdorferi recovered from chronically infected immunocompetent mice , 1994, Infection and immunity.
[93] R. Marconi,et al. Analysis of the distribution and molecular heterogeneity of the ospD gene among the Lyme disease spirochetes: evidence for lateral gene exchange , 1994, Journal of bacteriology.
[94] D. Haake,et al. A 9.0-kilobase-pair circular plasmid of Borrelia burgdorferi encodes an exported protein: evidence for expression only during infection , 1994, Infection and immunity.
[95] P. Reeves,et al. Molecular analysis of the rfb gene cluster of a group D2 Salmonella enterica strain: evidence for its origin from an insertion sequence-mediated recombination event between group E and D1 strains , 1994, Journal of bacteriology.
[96] B. Luft,et al. Complete nucleotide sequence of a circular plasmid from the Lyme disease spirochete, Borrelia burgdorferi , 1994, Journal of bacteriology.
[97] Ruth R. Montgomery,et al. Outer surface proteins E and F of Borrelia burgdorferi, the agent of Lyme disease , 1994, Infection and immunity.
[98] M. Nowak,et al. Adaptive evolution of highly mutable loci in pathogenic bacteria , 1994, Current Biology.
[99] Douglas Se. DNA Strider. A Macintosh program for handling protein and nucleic acid sequences. , 1994 .
[100] M. Koomey. Mechanisms of Pilus Antigenic Variation in Neisseria gonorrhoeae , 1994 .
[101] S. Douglas. DNA Strider. A Macintosh program for handling protein and nucleic acid sequences. , 1994, Methods in molecular biology.
[102] D. Dykhuizen,et al. Borrelia burgdorferi is clonal: implications for taxonomy and vaccine development. , 1993, Proceedings of the National Academy of Sciences of the United States of America.
[103] R. Marconi,et al. Variation in the size of the ospA-containing linear plasmid, but not the linear chromosome, among the three Borrelia species associated with Lyme disease. , 1993, Journal of general microbiology.
[104] J. Vuust,et al. Polymorphism in ospC gene of Borrelia burgdorferi and immunoreactivity of OspC protein: implications for taxonomy and for use of OspC protein as a diagnostic antigen , 1993, Journal of clinical microbiology.
[105] T. Schwan,et al. Identification of a protein in several Borrelia species which is related to OspC of the Lyme disease spirochetes , 1993, Journal of clinical microbiology.
[106] D. D. Thomas,et al. An OspB mutant of Borrelia burgdorferi has reduced invasiveness in vitro and reduced infectivity in vivo , 1993, Infection and immunity.
[107] A. Barbour. Linear DNA of Borrelia species and antigenic variation. , 1993, Trends in microbiology.
[108] W. Stolz,et al. Bacteriophages induced by ciprofloxacin in a Borrelia burgdorferi skin isolate. , 1993, Zentralblatt fur Bakteriologie : international journal of medical microbiology.
[109] M. Konkel,et al. Variability of osp genes and gene products among species of Lyme disease spirochetes , 1993, Infection and immunity.
[110] S. Casjens,et al. Linear chromosomal physical and genetic map of Borrelia burgdorferi, the Lyme disease agent , 1993, Molecular microbiology.
[111] U. Munderloh,et al. Plasmid modifications in a tick‐borne pathogen, Borrelia burgdorferi, cocultured with tick cells , 1993, Insect molecular biology.
[112] A. Barbour,et al. The cryptic ospC gene of Borrelia burgdorferi B31 is located on a circular plasmid , 1993, Infection and immunity.
[113] M. Staver,et al. IS1136, an insertion element in the erythromycin gene cluster of Saccharopolyspora erythraea. , 1993, Gene.
[114] S. Norris,et al. Low-passage-associated proteins of Borrelia burgdorferi B31: characterization and molecular cloning of OspD, a surface-exposed, plasmid-encoded lipoprotein , 1992, Infection and immunity.
[115] T. Schwan,et al. Recombination between genes encoding major outer surface proteins A and B of Borrelia burgdorferi , 1992, Molecular microbiology.
[116] A. Barbour,et al. The relapsing fever agent Borrelia hermsii has multiple copies of its chromosome and linear plasmids. , 1992, Genetics.
[117] P. Thompson,et al. Antibody-resistant mutants of Borrelia burgdorferi: in vitro selection and characterization , 1992, The Journal of experimental medicine.
[118] A. Barbour,et al. Linear- and circular-plasmid copy numbers in Borrelia burgdorferi , 1992, Journal of bacteriology.
[119] B. E. Davidson,et al. Physical map of the linear chromosome of the bacterium Borrelia burgdorferi 212, a causative agent of Lyme disease, and localization of rRNA genes , 1992, Journal of bacteriology.
[120] V. Chiodo,et al. Identification, genetic analysis and DNA sequence of a 7.8‐kb virulence region of the Salmonella typhimurium virulence plasmid , 1992, Molecular microbiology.
[121] R. C. Johnson,et al. DNA analysis of Borrelia burgdorferi NCH-1, the first northcentral U.S. human Lyme disease isolate , 1992, Journal of clinical microbiology.
[122] A. Barbour,et al. Linear plasmids of Borrelia burgdorferi have a telomeric structure and sequence similar to those of a eukaryotic virus , 1991, Journal of bacteriology.
[123] J. Fierer,et al. Genetic analysis of homology between the virulence plasmids of Salmonella dublin and Yersinia pseudotuberculosis , 1991, Infection and immunity.
[124] L. Gern,et al. Plasmid analysis and restriction fragment length polymorphisms of chromosomal DNA allow a distinction between Borrelia burgdorferi strains. , 1990, Zentralblatt fur Bakteriologie : international journal of medical microbiology.
[125] A. Barbour,et al. Cloning and sequence analysis of linear plasmid telomeres of the bacterium Borrelia burgdorferi , 1990, Molecular microbiology.
[126] T. Schwan,et al. Borrelia burgdorferi contains repeated DNA sequences that are species specific and plasmid associated , 1990, Infection and immunity.
[127] T. Schwan,et al. Analysis of supercoiled circular plasmids in infectious and non-infectious Borrelia burgdorferi. , 1990, Microbial pathogenesis.
[128] W. Pearson. Rapid and sensitive sequence comparison with FASTP and FASTA. , 1990, Methods in enzymology.
[129] I. Bancroft,et al. Characterization of an insertion sequence (IS891) of novel structure from the cyanobacterium Anabaena sp. strain M-131 , 1989, Journal of bacteriology.
[130] A. Barbour,et al. Megabase-sized linear DNA in the bacterium Borrelia burgdorferi, the Lyme disease agent. , 1989, Proceedings of the National Academy of Sciences of the United States of America.
[131] G. Baranton,et al. Linear chromosome of Borrelia burgdorferi. , 1989, Research in microbiology.
[132] R. C. Johnson,et al. Characterization of a circular plasmid from Borrelia burgdorferi, etiologic agent of Lyme disease , 1988, Journal of clinical microbiology.
[133] T. Schwan,et al. Changes in infectivity and plasmid profile of the Lyme disease spirochete, Borrelia burgdorferi, as a result of in vitro cultivation , 1988, Infection and immunity.
[134] A. Barbour,et al. Plasmid analysis of Borrelia burgdorferi, the Lyme disease agent , 1988, Journal of clinical microbiology.
[135] A. Barbour,et al. Linear plasmids of the bacterium Borrelia burgdorferi have covalently closed ends. , 1987, Science.
[136] M. Simon,et al. Transposition of structural genes to an expression sequence on a linear plasmid causes antigenic variation in the bacterium Borrelia hermsii , 1985, Nature.
[137] Johnson Rc,et al. Taxonomy of the Lyme disease spirochetes. , 1984, The Yale journal of biology and medicine.
[138] R. C. Johnson,et al. Taxonomy of the Lyme disease spirochetes. , 1984, The Yale journal of biology and medicine.
[139] B. Hall,et al. Role of cryptic genes in microbial evolution. , 1983, Molecular biology and evolution.
[140] J. P. Davis,et al. Lyme disease: A tick-borne spirochetosis , 1983 .
[141] W. Burgdorfer,et al. Bacteriophage in the Ixodes dammini spirochete, etiological agent of Lyme disease , 1983, Journal of bacteriology.
[142] A. Steere,et al. The spirochetal etiology of Lyme disease. , 1983, The New England journal of medicine.
[143] W. Burgdorfer,et al. Lyme disease-a tick-borne spirochetosis? , 1983, Science.