Buckling transition in icosahedral shells subjected to volume conservation constraint and pressure: relations to virus maturation.

Minimal energy shapes of closed, elastic shells with 12 pentagonal disclinations introduced in otherwise hexagonally coordinated crystalline lattice are studied. The geometry and the total energy of shells are studied as a function of the elastic properties of the material they are made of. Particular emphasis is put on the buckling transition of the shells, that is, a strong preference of the shell shapes to "buckle out" in spatial regions close to the pentagonal disclinations for a certain range of the elastic parameters of the problem. The transition effectively increases the mean square aspherity of shapes, making them look more like an icosahedron rather than a sphere, which is a preferred shape prior to the onset of the transition. The properties of the buckling transition are studied in cases when (i) the total volume enclosed by the elastic shell has to be fixed and when (ii) there is an internal pressure acting on the shell. This may be related to the maturation process in nonenveloped dsDNA viruses, where the insertion of the genetic material in a preformed protein shell (viral coating) may effectively impose the fixed volume and/or pressure constraint. Several scenarios that may explain the experimentally observed feature of mature viruses being more aspherical (facetted) from their immature precursors are discussed, and predictions for the elastic properties of viral coatings are obtained on the basis of the presented studies.

[1]  William M Gelbart,et al.  Forces and pressures in DNA packaging and release from viral capsids. , 2003, Biophysical journal.

[2]  A. Klug,et al.  Physical principles in the construction of regular viruses. , 1962, Cold Spring Harbor symposia on quantitative biology.

[3]  Stephen J. Wright,et al.  Numerical Optimization , 2018, Fundamental Statistical Inference.

[4]  H. Kroto,et al.  Symmetry, space, stars and C 60 * , 1997 .

[5]  T. Baker,et al.  Adding the Third Dimension to Virus Life Cycles: Three-Dimensional Reconstruction of Icosahedral Viruses from Cryo-Electron Micrographs , 2000, Microbiology and Molecular Biology Reviews.

[6]  T. Witten,et al.  Properties of ridges in elastic membranes , 1996, cond-mat/9609068.

[7]  John E. Johnson,et al.  Virus Particle Explorer (VIPER), a Website for Virus Capsid Structures and Their Computational Analyses , 2001, Journal of Virology.

[8]  L. Makowski An unreasonable man in a quasi-equivalent world. , 1998, Biophysical journal.

[9]  A C Steven,et al.  Virus Maturation Involving Large Subunit Rotations and Local Refolding , 2001, Science.

[10]  Gregory J. Morgan Historical review: viruses, crystals and geodesic domes. , 2003, Trends in biochemical sciences.

[11]  H. W. Kroto,et al.  The formation of quasi-icosahedral spiral shell carbon particles , 1988, Nature.

[12]  G. Wuite,et al.  Bacteriophage capsids: tough nanoshells with complex elastic properties. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[13]  David R Nelson,et al.  Virus shapes and buckling transitions in spherical shells. , 2003, Physical review. E, Statistical, nonlinear, and soft matter physics.

[14]  D. Caspar,et al.  Five-fold symmetry in crystalline quasicrystal lattices. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[15]  R Twarock,et al.  A tiling approach to virus capsid assembly explaining a structural puzzle in virology. , 2004, Journal of theoretical biology.

[16]  M. Baker,et al.  Coat protein fold and maturation transition of bacteriophage P22 seen at subnanometer resolutions , 2003, Nature Structural Biology.

[17]  David Reguera,et al.  Viral self-assembly as a thermodynamic process. , 2002, Physical review letters.

[18]  Boundary layer analysis of the ridge singularity in a thin plate. , 1996, Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics.

[19]  W. Gelbart,et al.  Origin of icosahedral symmetry in viruses. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[20]  Vibrations of closed-shell Lennard-Jones icosahedral and cuboctahedral clusters and their effect on the cluster ground-state energy , 2004, cond-mat/0404288.

[21]  David Reguera,et al.  Mechanical properties of viral capsids. , 2005, Physical review. E, Statistical, nonlinear, and soft matter physics.

[22]  B L Trus,et al.  The making and breaking of symmetry in virus capsid assembly: glimpses of capsid biology from cryoelectron microscopy , 1997, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[23]  Rob Phillips,et al.  Forces during bacteriophage DNA packaging and ejection. , 2004, Biophysical journal.

[24]  Rob Phillips,et al.  Mechanics of DNA packaging in viruses , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[25]  William W. Hager,et al.  A New Conjugate Gradient Method with Guaranteed Descent and an Efficient Line Search , 2005, SIAM J. Optim..

[26]  Carlos Bustamante,et al.  Supplemental data for : The Bacteriophage ø 29 Portal Motor can Package DNA Against a Large Internal Force , 2001 .

[27]  William M Gelbart,et al.  Elasticity theory and shape transitions of viral shells. , 2005, Physical review. E, Statistical, nonlinear, and soft matter physics.

[28]  H. Fraenkel-conrat Virus reconstitution and the proof of the existence of genomic RNA. , 1999, BioEssays : news and reviews in molecular, cellular and developmental biology.

[29]  Nelson,et al.  Defects in flexible membranes with crystalline order. , 1988, Physical review. A, General physics.