On detection and assessment of statistical significance of Genomic Islands

[1]  D. Swan,et al.  Comparative genome hybridization of Streptococcus mutans strains. , 2007, Oral microbiology and immunology.

[2]  Georgios S. Vernikos,et al.  Interpolated variable order motifs for identification of horizontally acquired DNA: revisiting the Salmonella pathogenicity islands , 2006, Bioinform..

[3]  Raghunath Chatterjee,et al.  Unsupervised statistical identification of genomic islands using oligonucleotide distributions with application toVibrio genomes , 2006 .

[4]  Carsten Damm,et al.  Score-based prediction of genomic islands in prokaryotic genomes using hidden Markov models , 2006, BMC Bioinformatics.

[5]  Kumar Rajakumar,et al.  A novel strategy for the identification of genomic islands by comparative analysis of the contents and contexts of tRNA sites in closely related bacteria , 2006, Nucleic acids research.

[6]  Korine S. E. Ung,et al.  Evidence of a Large Novel Gene Pool Associated with Prokaryotic Genomic Islands , 2005, PLoS genetics.

[7]  Sung Ho Yoon,et al.  A computational approach for identifying pathogenicity islands in prokaryotic genomes , 2005, BMC Bioinformatics.

[8]  Aristotelis Tsirigos,et al.  A sensitive, support-vector-machine method for the detection of horizontal gene transfers in viral, archaeal and bacterial genomes , 2005, Nucleic acids research.

[9]  Aristotelis Tsirigos,et al.  A new computational method for the detection of horizontal gene transfer events , 2005, Nucleic acids research.

[10]  Ulrich Dobrindt,et al.  Genomic islands in pathogenic and environmental microorganisms , 2004, Nature Reviews Microbiology.

[11]  Ren Zhang,et al.  A systematic method to identify genomic islands and its applications in analyzing the genomes of Corynebacterium glutamicum and Vibrio vulnificus CMCP6 chromosome I , 2004, Bioinform..

[12]  Rainer Merkl,et al.  SIGI: score-based identification of genomic islands , 2004, BMC Bioinformatics.

[13]  Qiang Tu,et al.  Detecting pathogenicity islands and anomalous gene clusters by iterative discriminant analysis. , 2003, FEMS microbiology letters.

[14]  K. Nelson,et al.  Global features of the Pseudomonas putida KT2440 genome sequence. , 2002, Environmental microbiology.

[15]  Il'ina Ts,et al.  [Bacterial genomic islands: organization, function, and role in evolution]. , 2002 .

[16]  Kim Rutherford,et al.  Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18 , 2001, Nature.

[17]  S Karlin,et al.  Detecting anomalous gene clusters and pathogenicity islands in diverse bacterial genomes. , 2001, Trends in microbiology.

[18]  G. Weinstock,et al.  Genomics and bacterial pathogenesis. , 2000, Emerging infectious diseases.

[19]  J. Lake,et al.  Horizontal gene transfer among genomes: the complexity hypothesis. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[20]  S Karlin,et al.  Compositional biases of bacterial genomes and evolutionary implications , 1997, Journal of bacteriology.

[21]  J Hacker,et al.  Pathogenicity islands of virulent bacteria: structure, function and impact on microbial evolution , 1997, Molecular microbiology.

[22]  Howard Ochman,et al.  Pathogenicity Islands: Bacterial Evolution in Quantum Leaps , 1996, Cell.

[23]  S. Pietrokovski,et al.  Comparing nucleotide and protein sequences by linguistic methods. , 1994, Journal of biotechnology.

[24]  E. Trifonov,et al.  Imported sequences in the mitochondrial yeast genome identified by nucleotide linguistics. , 1992, Gene.

[25]  R. Randles,et al.  Introduction to the Theory of Nonparametric Statistics , 1991 .

[26]  E N Trifonov,et al.  Linguistic measure of taxonomic and functional relatedness of nucleotide sequences. , 1990, Journal of biomolecular structure & dynamics.

[27]  J Hacker,et al.  Deletions of chromosomal regions coding for fimbriae and hemolysins occur in vitro and in vivo in various extraintestinal Escherichia coli isolates. , 1990, Microbial pathogenesis.

[28]  Douglas A. Wolfe,et al.  Introduction to the Theory of Nonparametric Statistics. , 1980 .

[29]  H. B. Mann,et al.  On a Test of Whether one of Two Random Variables is Stochastically Larger than the Other , 1947 .

[30]  F. Wilcoxon Individual Comparisons by Ranking Methods , 1945 .

[31]  David Hinkley,et al.  Bootstrap Methods: Another Look at the Jackknife , 2008 .

[32]  M. Kenward,et al.  An Introduction to the Bootstrap , 2007 .

[33]  Kelly P. Williams,et al.  Islander: a database of integrative islands in prokaryotic genomes, the associated integrases and their DNA site specificities , 2004, Nucleic Acids Res..

[34]  Santiago Garcia-Vallvé,et al.  HGT-DB: a database of putative horizontally transferred genes in prokaryotic complete genomes , 2003, Nucleic Acids Res..

[35]  Micah Acinapura,et al.  Computational DNA Sequence Analysis , 2003 .

[36]  T. Il’ina,et al.  [Bacterial genomic islands: organization, function, and role in evolution]. , 2002, Molekuliarnaia biologiia.

[37]  J. Hacker,et al.  Pathogenicity islands and the evolution of microbes. , 2000, Annual review of microbiology.

[38]  J. Hacker,et al.  Pathogenicity islands and other mobile virulence elements , 1999 .

[39]  J. Hacker,et al.  The Concept of Pathogenicity Islands , 1999 .