Complete Genome Sequence of Francisella tularensis subsp. holarctica Strain A271_1 (FDC408), Isolated from a Eurasian Beaver (Castor fiber)

Here, we report the complete genome sequence of Francisella tularensis subsp. holarctica strain A271_1, isolated from a Eurasian beaver (Castor fiber) in 2012 in the Berlin/Brandenburg region, Germany. ABSTRACT Here, we report the complete genome sequence of Francisella tularensis subsp. holarctica strain A271_1, isolated from a Eurasian beaver (Castor fiber) in 2012 in the Berlin/Brandenburg region, Germany.

[1]  Wen J. Li,et al.  RefSeq: an update on prokaryotic genome annotation and curation , 2017, Nucleic Acids Res..

[2]  Heng Li,et al.  Minimap2: pairwise alignment for nucleotide sequences , 2017, Bioinform..

[3]  Ryan R. Wick,et al.  Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads , 2016, bioRxiv.

[4]  K. Heuner,et al.  High and novel genetic diversity of Francisella tularensis in Germany and indication of environmental persistence , 2016, Epidemiology and Infection.

[5]  Eric P. Nawrocki,et al.  NCBI prokaryotic genome annotation pipeline , 2016, Nucleic acids research.

[6]  J. Parkhill,et al.  Circlator: automated circularization of genome assemblies using long sequencing reads , 2015, bioRxiv.

[7]  Anders Johansson,et al.  CanSNPer: a hierarchical genotype classifier of clonal pathogens , 2014, Bioinform..

[8]  Björn Usadel,et al.  Trimmomatic: a flexible trimmer for Illumina sequence data , 2014, Bioinform..

[9]  Helga Thorvaldsdóttir,et al.  Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration , 2012, Briefings Bioinform..

[10]  Eric Haugen,et al.  Genome Sequence of Francisella tularensis subspecies holarctica Strain FSC200, Isolated from a Child with Tularemia , 2012, Journal of bacteriology.

[11]  Steven L Salzberg,et al.  Fast gapped-read alignment with Bowtie 2 , 2012, Nature Methods.

[12]  Anders Sjöstedt,et al.  The complete genome sequence of Francisella tularensis, the causative agent of tularemia , 2005, Nature Genetics.

[13]  Richard W. Titball,et al.  Tularemia , 1927, Clinical Microbiology Reviews.

[14]  G. Sandström,et al.  COMPARISON OF SERUM AND LUNG EXTRACTS FOR SURVEYS OF WILD ANIMALS FOR ANTIBODIES TO FRANCISELLA TULARENSIS BIOVAR PALAEARCTICA , 1988, Journal of wildlife diseases.

[15]  T. Mörner,et al.  A serological survey of antibodies against Francisella tularensis in some Swedish mammals. , 1983, Nordisk veterinaermedicin.