Knife-Edge Scanning Microscopy: High-throughput Imaging and Analysis of Massive Volumes of Biological Microstructures

[1]  Dmitri B. Chklovskii,et al.  Wiring Optimization in Cortical Circuits , 2002, Neuron.

[2]  Marcus Kaiser,et al.  Nonoptimal Component Placement, but Short Processing Paths, due to Long-Distance Projections in Neural Systems , 2006, PLoS Comput. Biol..

[3]  J. Keyser,et al.  Fast Filament Tracking Using Graphics Hardware Brain Networks , 2007 .

[4]  Kristen M. Harris,et al.  Synthesis of Research: Extending Unbiased Stereology of Brain Ultrastructure to Three-dimensional Volumes , 2001, J. Am. Medical Informatics Assoc..

[5]  Guido Gerig,et al.  Three-dimensional multi-scale line filter for segmentation and visualization of curvilinear structures in medical images , 1998, Medical Image Anal..

[6]  Giorgio A. Ascoli,et al.  A cross-platform freeware tool for digital reconstruction of neuronal arborizations from image stacks , 2007, Neuroinformatics.

[7]  D Mayerich,et al.  Knife‐edge scanning microscopy for imaging and reconstruction of three‐dimensional anatomical structures of the mouse brain , 2008, Journal of microscopy.

[8]  W. Denk,et al.  Two-photon laser scanning fluorescence microscopy. , 1990, Science.

[9]  Hong Shen,et al.  Rapid automated tracing and feature extraction from retinal fundus images using direct exploratory algorithms , 1999, IEEE Transactions on Information Technology in Biomedicine.

[10]  Guillermo A Cecchi,et al.  BMC Cell Biology , 2022 .

[11]  Hans-Peter Seidel,et al.  Visualization with stylized line primitives , 2005, VIS 05. IEEE Visualization, 2005..

[12]  J. Pawley,et al.  Handbook of Biological Confocal Microscopy , 1990, Springer US.

[13]  Michael J. Ackerman,et al.  Toward a Common Validation Methodology for Segmentation and Registration Algorithms , 2000, MICCAI.

[14]  Jerry L Prince,et al.  Current methods in medical image segmentation. , 2000, Annual review of biomedical engineering.

[15]  John Keyser,et al.  Filament tracking and encoding for complex biological networks , 2008, SPM '08.

[16]  Kostas Haris,et al.  Model-based morphological segmentation and labeling of coronary angiograms , 1999, IEEE Transactions on Medical Imaging.

[17]  W. Denk,et al.  Serial Block-Face Scanning Electron Microscopy to Reconstruct Three-Dimensional Tissue Nanostructure , 2004, PLoS biology.

[18]  Richard W. Hamming,et al.  Numerical Methods for Scientists and Engineers , 1962 .

[19]  Khalid A. Al-Kofahi,et al.  Rapid automated three-dimensional tracing of neurons from confocal image stacks , 2002, IEEE Transactions on Information Technology in Biomedicine.

[20]  Stephen J. Smith,et al.  Array Tomography: A New Tool for Imaging the Molecular Architecture and Ultrastructure of Neural Circuits , 2007, Neuron.

[21]  M H Ellisman,et al.  Video-rate scanning two-photon excitation fluorescence microscopy and ratio imaging with cameleons. , 1999, Biophysical journal.

[22]  Lawrence D. Jackel,et al.  Backpropagation Applied to Handwritten Zip Code Recognition , 1989, Neural Computation.

[23]  J. S. Guntupalli,et al.  Physical sectioning in 3D biological microscopy , 2009 .

[24]  Cem Yuksel,et al.  Visualization of Fibrous and Thread-like Data , 2006, IEEE Transactions on Visualization and Computer Graphics.

[25]  R.M. McElhaney,et al.  Algorithms for graphics and image processing , 1983, Proceedings of the IEEE.

[26]  S. Shen-Orr,et al.  Network motifs: simple building blocks of complex networks. , 2002, Science.

[27]  William M. Wells,et al.  Validation of Image Segmentation and Expert Quality with an Expectation-Maximization Algorithm , 2002, MICCAI.

[28]  Yoonsuck Choe,et al.  Automated lateral sectioning for Knife-Edge Scanning Microscopy , 2008, 2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

[29]  Olaf Sporns,et al.  Classes of network connectivity and dynamics , 2001, Complex..