Dynamic modularity in protein interaction networks predicts breast cancer outcome

[1]  Gianluca Bontempi,et al.  Comparison of prognostic gene expression signatures for breast cancer , 2008, BMC Genomics.

[2]  Robert A. Weinberg,et al.  Ras oncogenes: split personalities , 2008, Nature Reviews Molecular Cell Biology.

[3]  D. West,et al.  Prognosis of breast cancer in carriers of BRCA1 and BRCA2 mutations. , 2007, The New England journal of medicine.

[4]  P. Bork,et al.  Systematic Discovery of In Vivo Phosphorylation Networks , 2007, Cell.

[5]  Lester L. Peters,et al.  Genome-wide association study identifies novel breast cancer susceptibility loci , 2007, Nature.

[6]  Marc Vidal,et al.  Confirmation of Organized Modularity in the Yeast Interactome , 2007, PLoS biology.

[7]  L. Skoog,et al.  Intact Mre11/Rad50/Nbs1 complex predicts good response to radiotherapy in early breast cancer. , 2007, International journal of radiation oncology, biology, physics.

[8]  V. McKusick.  Mendelian Inheritance in Man and Its Online Version, OMIM , 2007, The American Journal of Human Genetics.

[9]  Delbert Dueck,et al.  Clustering by Passing Messages Between Data Points , 2007, Science.

[10]  G. Sherlock,et al.  The prognostic role of a gene signature from tumorigenic breast-cancer cells. , 2007, The New England journal of medicine.

[11]  Gabriele Ausiello,et al.  MINT: the Molecular INTeraction database , 2006, Nucleic Acids Res..

[12]  Christian von Mering,et al.  STRING 7—recent developments in the integration and prediction of protein interactions , 2006, Nucleic Acids Res..

[13]  Mark Gerstein,et al.  The tYNA platform for comparative interactomics: a web tool for managing, comparing and mining multiple networks , 2006, Bioinform..

[14]  L. V. van't Veer,et al.  Validation and clinical utility of a 70-gene prognostic signature for women with node-negative breast cancer. , 2006, Journal of the National Cancer Institute.

[15]  Peer Bork,et al.  SMART 5: domains in the context of genomes and networks , 2005, Nucleic Acids Res..

[16]  Igor Jurisica,et al.  Online Predicted Human Interaction Database , 2005, Bioinform..

[17]  Hunter B. Fraser,et al.  Modularity and evolutionary constraint on proteins , 2005, Nature Genetics.

[18]  M. Melisko.  A multigene assay to predict recurrence of tamoxifen-treated, node-negative breast cancer , 2005 .

[19]  P. Bork,et al.  Dynamic Complex Formation During the Yeast Cell Cycle , 2005, Science.

[20]  M. Cronin,et al.  A multigene assay to predict recurrence of tamoxifen-treated, node-negative breast cancer. , 2004, The New England journal of medicine.

[21]  Lan V. Zhang,et al.  Evidence for dynamically organized modularity in the yeast protein–protein interaction network , 2004, Nature.

[22]  M. Gerstein,et al.  Genomic analysis of essentiality within protein networks. , 2004, Trends in genetics : TIG.

[23]  S. Batalov,et al.  A gene atlas of the mouse and human protein-encoding transcriptomes. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[24]  T. Hubbard,et al.  A census of human cancer genes , 2004, Nature Reviews Cancer.

[25]  Z. Oltvai,et al.  Network biology: understanding the cell's functional organization , 2004, Nature Reviews Genetics.

[26]  Ash A. Alizadeh,et al.  Gene Expression Signature of Fibroblast Serum Response Predicts Human Cancer Progression: Similarities between Tumors and Wounds , 2004, PLoS biology.

[27]  P. Shannon,et al.  Cytoscape: a software environment for integrated models of biomolecular interaction networks. , 2003, Genome research.

[28]  Leszek Rychlewski,et al.  ELM server: a new resource for investigating short functional sites in modular eukaryotic proteins , 2003, Nucleic Acids Res..

[29]  R. Tibshirani,et al.  Repeated observation of breast tumor subtypes in independent gene expression data sets , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[30]  M. Marton,et al.  A gene-expression signature as a predictor of survival in breast cancer. , 2002, The New England journal of medicine.

[31]  B. Snel,et al.  Comparative assessment of large-scale data sets of protein–protein interactions , 2002, Nature.

[32]  M. Ashburner,et al.  Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.

[33]  K. Yao,et al.  Bridge-1, a Novel PDZ-Domain Coactivator of E2A-Mediated Regulation of Insulin Gene Transcription , 1999, Molecular and Cellular Biology.

[34]  Neda Nategh,et al.  Evidence for dynamically organized modularity in the yeast protein-protein interaction network , 2006 .

[35]  E. Hall,et al.  The nature of biotechnology. , 1988, Journal of biomedical engineering.

[36]  T. Ideker,et al.  Network-based classification of breast cancer metastasis , 2007, Molecular Systems Biology.