Nanobioprobe mediated DNA aptamers for explosive detection.

Specific nucleic acid aptamers using the microtiter plate based modified SELEX method against explosive trinitrotoluene are reported. Efficient partitioning of dsDNA was carried out using streptavidin labeled gold nanoprobes for the selection of specific aptamers. The selected binders having an affinity of ~10(-7) M were used in the newly developed electrochemical aptasensor, exhibiting a detection limit of around 1 ppb for trinitrotoluene.

[1]  M. Bayindir,et al.  Extremely fast and highly selective detection of nitroaromatic explosive vapours using fluorescent polymer thin films. , 2013, Chemical communications.

[2]  L. Gold,et al.  Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase. , 1990, Science.

[3]  Zhongpin Zhang,et al.  Resonance energy transfer-amplifying fluorescence quenching at the surface of silica nanoparticles toward ultrasensitive detection of TNT. , 2008, Analytical chemistry.

[4]  J C Cox,et al.  Automated selection of anti-protein aptamers. , 2001, Bioorganic & medicinal chemistry.

[5]  L. Hurley,et al.  Characterization of the G-quadruplexes in the duplex nuclease hypersensitive element of the PDGF-A promoter and modulation of PDGF-A promoter activity by TMPyP4 , 2007, Nucleic acids research.

[6]  Kiyoshi Toko,et al.  High-performance Surface Plasmon Resonance Immunosensors for TNT Detection , 2007 .

[7]  Ming Zhou,et al.  Biofuel Cells for Self-Powered Electrochemical Biosensing and Logic Biosensing: A Review , 2012 .

[8]  S. Patil,et al.  Fluoranthene based fluorescent chemosensors for detection of explosive nitroaromatics. , 2012, Chemical communications.

[9]  P. Sharma,et al.  Amine functionalized graphene oxide/CNT nanocomposite for ultrasensitive electrochemical detection of trinitrotoluene. , 2013, Journal of hazardous materials.

[10]  Weihong Tan,et al.  Generating aptamers for recognition of virus-infected cells. , 2009, Clinical chemistry.

[11]  S. Jayasena Aptamers: an emerging class of molecules that rival antibodies in diagnostics. , 1999, Clinical chemistry.

[12]  M. Bowser,et al.  In vitro evolution of functional DNA using capillary electrophoresis. , 2004, Journal of the American Chemical Society.

[13]  Andrew D Ellington,et al.  Selection of fluorescent aptamer beacons that light up in the presence of zinc , 2008, Analytical and bioanalytical chemistry.

[14]  Jennifer M. Heemstra,et al.  General approach for engineering small-molecule-binding DNA split aptamers. , 2013, Analytical chemistry.

[15]  Artur Makarewicz,et al.  Electronic Supplementary Material ( ESI ) for ChemComm , 2015 .

[16]  Li Wang,et al.  Selection of DNA aptamers that bind to four organophosphorus pesticides , 2012, Biotechnology Letters.

[17]  Weihong Tan,et al.  Identification of liver cancer-specific aptamers using whole live cells. , 2008, Analytical chemistry.

[18]  A. Ganguli,et al.  Plasmon enhanced fluoro-immunoassay using egg yolk antibodies for ultra-sensitive detection of herbicide diuron. , 2013, The Analyst.

[19]  Eric V. Anslyn,et al.  Array sensing using optical methods for detection of chemical and biological hazards. , 2013, Chemical Society reviews.

[20]  P. S. Kim,et al.  Bioactive and nuclease-resistant L-DNA ligand of vasopressin. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[21]  Liang Zhao,et al.  Ordered gold nanoparticle arrays as surface-enhanced Raman spectroscopy substrates for label-free detection of nitroexplosives. , 2011, Talanta.