Identifying Interactions Between Long Noncoding RNAs and Diseases Based on Computational Methods.
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Wei Lan | Qingfeng Chen | Dehuan Lai | Liyu Huang | Wei Lan | Liyu Huang | D. Lai | Qingfeng Chen
[1] K. Becker,et al. The Genetic Association Database , 2004, Nature Genetics.
[2] C. Bond,et al. Paraspeckles: nuclear bodies built on long noncoding RNA , 2009, The Journal of cell biology.
[3] J. Mattick,et al. Long non-coding RNAs: insights into functions , 2009, Nature Reviews Genetics.
[4] Sergio Verjovski-Almeida,et al. Long intronic noncoding RNA transcription: expression noise or expression choice? , 2009, Genomics.
[5] C. Ponting,et al. Evolution and Functions of Long Noncoding RNAs , 2009, Cell.
[6] Michael F. Lin,et al. Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals , 2009, Nature.
[7] Howard Y. Chang,et al. Long Noncoding RNA as Modular Scaffold of Histone Modification Complexes , 2010, Science.
[8] D. Altshuler,et al. A map of human genome variation from population-scale sequencing , 2010, Nature.
[9] C. Ponting,et al. Long noncoding RNA genes: conservation of sequence and brain expression among diverse amniotes , 2010, Genome Biology.
[10] G. Carmichael,et al. Decoding the function of nuclear long non-coding RNAs. , 2010, Current opinion in cell biology.
[11] Gang Li,et al. Interval-based distance function for identifying RNA structure candidates. , 2011, Journal of theoretical biology.
[12] M. Guyer,et al. Charting a course for genomic medicine from base pairs to bedside , 2011, Nature.
[13] Deeksha Bhartiya,et al. Conceptual approaches for lncRNA drug discovery and future strategies , 2012, Expert opinion on drug discovery.
[14] Anirban P. Mitra,et al. A Central Role for Long Non-Coding RNA in Cancer , 2011, Front. Gene..
[15] Andrea Masotti,et al. Bioinformatics Tools and Novel Challenges in Long Non-Coding RNAs (lncRNAs) Functional Analysis , 2011, International journal of molecular sciences.
[16] Gang Feng,et al. Disease Ontology: a backbone for disease semantic integration , 2011, Nucleic Acids Res..
[17] Howard Y. Chang,et al. Genome regulation by long noncoding RNAs. , 2012, Annual review of biochemistry.
[18] J. Rinn,et al. Modular regulatory principles of large non-coding RNAs , 2012, Nature.
[19] Xing Chen,et al. LncRNADisease: a database for long-non-coding RNA-associated diseases , 2012, Nucleic Acids Res..
[20] Howard Y. Chang,et al. Long Noncoding RNAs: Cellular Address Codes in Development and Disease , 2013, Cell.
[21] M. Rosenfeld,et al. LncRNA-Dependent Mechanisms of Androgen Receptor-regulated Gene Activation Programs , 2013, Nature.
[22] Wei Lan,et al. Mining Featured Patterns of MiRNA Interaction Based on Sequence and Structure Similarity , 2013, IEEE/ACM Transactions on Computational Biology and Bioinformatics.
[23] Xing Chen,et al. Novel human lncRNA-disease association inference based on lncRNA expression profiles , 2013, Bioinform..
[24] Y. Wang,et al. Mammalian ncRNA-disease repository: a global view of ncRNA-mediated disease network , 2013, Cell Death and Disease.
[25] Lennart Martens,et al. LNCipedia: a database for annotated human lncRNA transcript sequences and structures , 2012, Nucleic Acids Res..
[26] D. Spector,et al. The noncoding RNA MALAT1 is a critical regulator of the metastasis phenotype of lung cancer cells. , 2013, Cancer research.
[27] Manolis Kellis,et al. The tissue-specific lncRNA Fendrr is an essential regulator of heart and body wall development in the mouse. , 2013, Developmental cell.
[28] Sarah Geisler,et al. RNA in unexpected places: long non-coding RNA functions in diverse cellular contexts , 2013, Nature Reviews Molecular Cell Biology.
[29] Ranjan Kumar Maji,et al. LncRBase: An Enriched Resource for lncRNA Information , 2014, PloS one.
[30] Steven B. Cogill,et al. Co-expression Network Analysis of Human lncRNAs and Cancer Genes , 2014, Cancer informatics.
[31] Wei Lan,et al. Identification of important positions within miRNAs by integrating sequential and structural features. , 2014, Current protein & peptide science.
[32] Zhenggang Zhu,et al. Overexpression of lncRNA H19 enhances carcinogenesis and metastasis of gastric cancer , 2014, Oncotarget.
[33] Lin Liu,et al. Inferring novel lncRNA-disease associations based on a random walk model of a lncRNA functional similarity network. , 2014, Molecular bioSystems.
[34] Xing Chen,et al. A Computational Framework to Infer Human Disease-Associated Long Noncoding RNAs , 2014, PloS one.
[35] Guodong Yang,et al. LncRNA: a link between RNA and cancer. , 2014, Biochimica et biophysica acta.
[36] Jianxin Wang,et al. Effective identification of essential proteins based on priori knowledge, network topology and gene expressions. , 2014, Methods.
[37] B. Krishan. Crop diversification in India: A study of review of literature , 2014, BIOINFORMATICS 2014.
[38] Salvatore Alaimo,et al. ncPred: ncRNA-Disease Association Prediction through Tripartite Network-Based Inference , 2014, Front. Bioeng. Biotechnol..
[39] Desi Shang,et al. Construction of a lncRNA-PCG bipartite network and identification of cancer-related lncRNAs: a case study in prostate cancer. , 2015, Molecular bioSystems.
[40] Chengqi Zhang,et al. Bioinformatics in protein kinases regulatory network and drug discovery. , 2015, Mathematical biosciences.
[41] Nikos Kyrpides,et al. The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification , 2014, Nucleic Acids Res..
[42] Marcel E. Dinger,et al. lncRNAdb v2.0: expanding the reference database for functional long noncoding RNAs , 2014, Nucleic Acids Res..
[43] P. Kapranov,et al. The Landscape of long noncoding RNA classification. , 2015, Trends in genetics : TIG.
[44] Qionghai Dai,et al. Constructing lncRNA functional similarity network based on lncRNA-disease associations and disease semantic similarity , 2015, Scientific Reports.
[45] Dapeng Hao,et al. Prioritizing candidate disease-related long non-coding RNAs by walking on the heterogeneous lncRNA and disease network. , 2015, Molecular bioSystems.
[46] Núria Queralt-Rosinach,et al. DisGeNET: a discovery platform for the dynamical exploration of human diseases and their genes , 2015, Database J. Biol. Databases Curation.
[47] Xing Chen,et al. Predicting lncRNA-disease associations and constructing lncRNA functional similarity network based on the information of miRNA , 2015, Scientific Reports.
[48] Jun Yu,et al. LncRNAWiki: harnessing community knowledge in collaborative curation of human long non-coding RNAs , 2014, Nucleic Acids Res..
[49] Wei Lan,et al. Computational Approaches for Prioritizing Candidate Disease Genes Based on PPI Networks , 2015 .
[50] François Schiettecatte,et al. OMIM.org: Online Mendelian Inheritance in Man (OMIM®), an online catalog of human genes and genetic disorders , 2014, Nucleic Acids Res..
[51] Min Li,et al. Heterogeneous Network Model to Infer Human Disease-Long Intergenic Non-Coding RNA Associations , 2015, IEEE Transactions on NanoBioscience.
[52] Jing Bai,et al. Identification of cancer-related lncRNAs through integrating genome, regulome and transcriptome features. , 2015, Molecular bioSystems.
[53] K. Sanbonmatsu. Towards structural classification of long non-coding RNAs. , 2016, Biochimica et biophysica acta.
[54] Hengqiang Zhao,et al. Discovery of potential prognostic long non-coding RNA biomarkers for predicting the risk of tumor recurrence of breast cancer patients , 2016, Scientific Reports.
[55] Xing Chen,et al. FMLNCSIM: fuzzy measure-based lncRNA functional similarity calculation model , 2016, Oncotarget.
[56] Zhu-Hong You,et al. ILNCSIM: improved lncRNA functional similarity calculation model , 2016, Oncotarget.
[57] Lin Gao,et al. Advances in long noncoding RNAs: identification, structure prediction and function annotation , 2015, Briefings in functional genomics.
[58] Fang-Xiang Wu,et al. Prioritizing Disease Genes by Using Search Engine Algorithm , 2016 .
[59] Xing Chen,et al. IRWRLDA: improved random walk with restart for lncRNA-disease association prediction , 2016, Oncotarget.
[60] Wei Wu,et al. NONCODE 2016: an informative and valuable data source of long non-coding RNAs , 2015, Nucleic Acids Res..
[61] Yi Pan,et al. Predicting drug-target interaction using positive-unlabeled learning , 2016, Neurocomputing.
[62] Peng Wang,et al. Lnc2Cancer: a manually curated database of experimentally supported lncRNAs associated with various human cancers , 2015, Nucleic Acids Res..
[63] D. Gautheret,et al. Nonsense-Mediated Decay Restricts LncRNA Levels in Yeast Unless Blocked by Double-Stranded RNA Structure , 2016, Molecular cell.
[64] Haixiu Yang,et al. IntNetLncSim: an integrative network analysis method to infer human lncRNA functional similarity , 2016, Oncotarget.
[65] Chengqi Zhang,et al. Interval-Based Similarity for Classifying Conserved RNA Secondary Structures , 2016, IEEE Intelligent Systems.
[66] Jianxin Wang,et al. A novel method of predicting microRNA-disease associations based on microRNA, disease, gene and environment factor networks. , 2017, Methods.
[67] Yi Pan,et al. LDAP: a web server for lncRNA‐disease association prediction , 2016, Bioinform..
[68] Guang Li,et al. A Brief Review of Neural Networks Based Learning and Control and Their Applications for Robots , 2017, Complex..
[69] Yi Pan,et al. SDTRLS: Predicting Drug-Target Interactions for Complex Diseases Based on Chemical Substructures , 2017, Complex..
[70] Yixue Li,et al. Global Prioritizing Disease Candidate lncRNAs via a Multi-level Composite Network , 2017, Scientific Reports.
[71] Wangdong Xu,et al. IL-23R mutation is associated with ulcerative colitis: A systemic review and meta-analysis , 2016, Oncotarget.
[72] Xing Chen,et al. Long non-coding RNAs and complex diseases: from experimental results to computational models , 2016, Briefings Bioinform..
[73] Bin Hu,et al. Alzheimer’s Disease Classification Based on Individual Hierarchical Networks Constructed With 3-D Texture Features , 2017, IEEE Transactions on NanoBioscience.
[74] Yan Zhang,et al. Improved method for prioritization of disease associated lncRNAs based on ceRNA theory and functional genomics data , 2016, Oncotarget.
[75] Jianxin Wang,et al. A Framework for Integrating Multiple Biological Networks to Predict MicroRNA-Disease Associations , 2017, IEEE Transactions on NanoBioscience.
[76] Yi Pan,et al. Predicting MicroRNA-Disease Associations Based on Improved MicroRNA and Disease Similarities , 2018, IEEE/ACM Transactions on Computational Biology and Bioinformatics.
[77] Yanchun Liang,et al. Identification and Functional Inference for Tumor-Associated Long Non-Coding RNA , 2019, IEEE/ACM Transactions on Computational Biology and Bioinformatics.
[78] Yi Pan,et al. DNRLMF-MDA:Predicting microRNA-Disease Associations Based on Similarities of microRNAs and Diseases , 2019, IEEE/ACM Transactions on Computational Biology and Bioinformatics.