Twisted amide electrophiles enable cyclic peptide sequencing.

There is an ever-increasing interest in synthetic methods that not only enable peptide macrocyclization, but also facilitate downstream application of the synthesized molecules. We have found that aziridine amides are stereoelectronically attenuated in a macrocyclic environment such that non-specific interactions with biological nucleophiles are reduced or even shut down. The electrophilic reactivity, revealed at high pH, enables peptide sequencing by mass spectrometry, which will further broaden the utility of aziridine amide-containing libraries of macrocycles.

[1]  Andrei K. Yudin,et al.  Macrocycles: lessons from the distant past, recent developments, and future directions , 2014, Chemical science.

[2]  D. Craik,et al.  Disulfide-rich macrocyclic peptides as templates in drug design. , 2014, European journal of medicinal chemistry.

[3]  Fabrizio Giordanetto,et al.  Macrocyclic drugs and clinical candidates: what can medicinal chemists learn from their properties? , 2014, Journal of medicinal chemistry.

[4]  Serge Zaretsky,et al.  Exocyclic control of turn induction in macrocyclic peptide scaffolds. , 2013, Chemistry.

[5]  Dianqing Sun,et al.  Macrocyclic Drugs and Synthetic Methodologies toward Macrocycles , 2013, Molecules.

[6]  L. Lindoy,et al.  Metals, macrocycles and molecular assemblies - macrocyclic complexes in metallo-supramolecular chemistry. , 2013, Chemical Society reviews.

[7]  J. Gestwicki,et al.  Expanding the Number of ‘Druggable’ Targets: Non‐Enzymes and Protein–Protein Interactions , 2013, Chemical biology & drug design.

[8]  R. Chapman,et al.  Design and properties of functional nanotubes from the self-assembly of cyclic peptide templates. , 2012, Chemical Society reviews.

[9]  Ian Collins,et al.  Macrocycles in new drug discovery. , 2012, Future medicinal chemistry.

[10]  Conformational modulation of in vitro activity of cyclic RGD peptides via aziridine aldehyde-driven macrocyclization chemistry. , 2012, Bioconjugate chemistry.

[11]  S. Glover,et al.  Reliable determination of amidicity in acyclic amides and lactams. , 2012, The Journal of organic chemistry.

[12]  Christopher J. White,et al.  A versatile scaffold for site-specific modification of cyclic tetrapeptides. , 2012, Organic letters.

[13]  T. Kodadek,et al.  A Cleavable Scaffold Strategy for the Synthesis of One-Bead One-Compound Cyclic Peptoid Libraries That Can Be Sequenced By Tandem Mass Spectrometry. , 2012, Tetrahedron letters.

[14]  S. Sieber,et al.  β-Lactams and β-lactones as activity-based probes in chemical biology , 2012 .

[15]  S. Kelley,et al.  Solvatochromic reagents for multicomponent reactions and their utility in the development of cell-permeable macrocyclic peptide vectors. , 2011, Chemistry.

[16]  Lance Wells,et al.  Combining high-energy C-trap dissociation and electron transfer dissociation for protein O-GlcNAc modification site assignment. , 2011, Journal of proteome research.

[17]  Hosein Mohimani,et al.  Sequencing cyclic peptides by multistage mass spectrometry , 2011, Proteomics.

[18]  Martin Breugst,et al.  Farewell to the HSAB treatment of ambident reactivity. , 2011, Angewandte Chemie.

[19]  D. Craik,et al.  The chemistry of cyclotides. , 2011, The Journal of organic chemistry.

[20]  É. Marsault,et al.  Macrocycles are great cycles: applications, opportunities, and challenges of synthetic macrocycles in drug discovery. , 2011, Journal of medicinal chemistry.

[21]  J. Aubé,et al.  Medium-bridged lactams: a new class of non-planar amides. , 2011, Organic & biomolecular chemistry.

[22]  Ji Hoon Lee,et al.  A simple strategy for the construction of combinatorial cyclic peptoid libraries. , 2010, Chemical communications.

[23]  David Baker,et al.  Quantitative reactivity profiling predicts functional cysteines in proteomes , 2010, Nature.

[24]  D. Powell,et al.  Structural characterization of N-protonated amides: regioselective N-activation of medium-bridged twisted lactams. , 2010, Journal of the American Chemical Society.

[25]  J. Granja,et al.  Towards functional bionanomaterials based on self-assembling cyclic peptide nanotubes. , 2010, Chemical Society reviews.

[26]  J. Aubé,et al.  Synthesis of medium-bridged twisted lactams via cation-pi control of the regiochemistry of the intramolecular Schmidt reaction. , 2010, The Journal of organic chemistry.

[27]  Vishal Rai,et al.  Macrocyclization of linear peptides enabled by amphoteric molecules. , 2010, Journal of the American Chemical Society.

[28]  J. Aubé,et al.  Synthesis, structural analysis, and reactivity of bridged orthoamides by intramolecular Schmidt reaction. , 2010, Journal of the American Chemical Society.

[29]  J. Aubé,et al.  Proximity effects in nucleophilic addition reactions to medium-bridged twisted lactams: remarkably stable tetrahedral intermediates. , 2010, Journal of the American Chemical Society.

[30]  S. Kron,et al.  Peptide reporters of kinase activity in whole cell lysates. , 2010, Biopolymers.

[31]  J. Aubé,et al.  Synthesis and rearrangement of a bridged thioamide. , 2009, Chemical communications.

[32]  J. Aubé,et al.  Corey-Chaykovsky epoxidation of twisted amides: synthesis and reactivity of bridged spiro-epoxyamines. , 2009, Journal of the American Chemical Society.

[33]  J. Aubé,et al.  Direct synthesis of medium-bridged twisted amides via a transannular cyclization strategy. , 2009, Organic letters.

[34]  Nuno Bandeira,et al.  Interpretation of tandem mass spectra obtained from cyclic nonribosomal peptides. , 2009, Analytical chemistry.

[35]  J. Reymond,et al.  On-bead cyclization in a combinatorial library of 15,625 octapeptides. , 2009, Bioorganic & medicinal chemistry.

[36]  J. Aubé,et al.  Stability of medium-bridged twisted amides in aqueous solutions. , 2009, The Journal of organic chemistry.

[37]  G. Superti-Furga,et al.  Structural Coupling of SH2-Kinase Domains Links Fes and Abl Substrate Recognition and Kinase Activation , 2008, Cell.

[38]  D. G. Udugamasooriya,et al.  Conformational constraint in protein ligand design and the inconsistency of binding entropy. , 2008, Biopolymers.

[39]  D. V. Van Vranken,et al.  Synthesis, Screening, and Sequencing of Cysteine-Rich One-Bead One-Compound Peptide Libraries , 2008, Journal of combinatorial chemistry.

[40]  Stephen P. Hale,et al.  The exploration of macrocycles for drug discovery — an underexploited structural class , 2008, Nature Reviews Drug Discovery.

[41]  F. Aricò,et al.  Reaction of the ambident electrophile dimethyl carbonate with the ambident nucleophile phenylhydrazine. , 2008, The Journal of organic chemistry.

[42]  J. Clayden,et al.  The twisted amide 2-quinuclidone: 60 years in the making. , 2006, Angewandte Chemie.

[43]  S. Joo,et al.  High-throughput sequence determination of cyclic peptide library members by partial Edman degradation/mass spectrometry. , 2006, Journal of the American Chemical Society.

[44]  Vasso Apostolopoulos,et al.  Round and round we go: cyclic peptides in disease. , 2006, Current medicinal chemistry.

[45]  Brian M. Stoltz,et al.  Synthesis and structural analysis of 2-quinuclidonium tetrafluoroborate , 2006, Nature.

[46]  L. Rossi,et al.  Dimethyl carbonate as an ambident electrophile. , 2005, The Journal of organic chemistry.

[47]  Nishanth Marthandan,et al.  Photolithographic synthesis of cyclic peptide arrays using a differential deprotection strategy. , 2005, Chemical communications.

[48]  D. A. Annis,et al.  A general technique to rank protein-ligand binding affinities and determine allosteric versus direct binding site competition in compound mixtures. , 2004, Journal of the American Chemical Society.

[49]  J. Brodbelt,et al.  MSn characterization of protonated cyclic peptides and metal complexes , 2004, Journal of the American Society for Mass Spectrometry.

[50]  X. Eric Hu,et al.  Nucleophilic ring opening of aziridines , 2004 .

[51]  Jan Kok,et al.  Identification and Characterization of Two Novel Clostridial Bacteriocins, Circularin A and Closticin 574 , 2003, Applied and Environmental Microbiology.

[52]  M Reza Ghadiri,et al.  Automated mass spectrometric sequence determination of cyclic peptide library members. , 2003, Journal of combinatorial chemistry.

[53]  J. Sweeney Aziridines: epoxides' ugly cousins? , 2002, Chemical Society reviews.

[54]  P. Rosner,et al.  Strategic use of affinity-based mass spectrometry techniques in the drug discovery process. , 2002, Analytical chemistry.

[55]  I. Komarov,et al.  Synthesis, structure and reactions of the most twisted amide , 2001 .

[56]  H. Stamm Nucleophilic ring opening of aziridines , 1999 .

[57]  I. Komarov,et al.  Distortion of the amide bond in amides and lactams. Photoelectron-spectrum and electronic structure of 3,5,7-trimethyl-1-azaadamantan-2-one, the most twisted amide , 1999 .

[58]  R. Kaiser,et al.  Enhancement of cyanogen bromide cleavage yields for methionyl-serine and methionyl-threonine peptide bonds. , 1999, Analytical biochemistry.

[59]  I. Komarov,et al.  SPONTANEOUS, MILLISECOND FORMATION OF A TWISTED AMIDE FROM THE AMINO ACID,AND THE CRYSTAL STRUCTURE OF A TETRAHEDRAL INTERMEDIATE , 1998 .

[60]  I. Komarov,et al.  The Most Twisted Amide: Structure and Reactions. , 1998, Angewandte Chemie.

[61]  X. Zhang,et al.  De novo peptide sequencing in an ion trap mass spectrometer with 18O labeling. , 1998, Rapid communications in mass spectrometry : RCM.

[62]  T. Schirmeister Aziridine‐2,3‐dicarboxylic Acid Derivatives as Inhibitors of Papain , 1996 .

[63]  B. Lygo N-Acyl-2-methylaziridines: Synthesis and utility in the C-acylation of β-ketoester derived dianions , 1995 .

[64]  P. Gantzel,et al.  Tilted amides in amino acid and peptide derivatives. , 1994, Chemistry & biology.

[65]  D. Santi,et al.  Identification of highest-affinity ligands by affinity selection from equimolar peptide mixtures generated by robotic synthesis , 1992, Proceedings of the National Academy of Sciences of the United States of America.

[66]  H. Stamm,et al.  Reactions with aziridines. 43. Reactivity difference of cis-trans pairs: different behavior of stilbene oxides and activated stilbene imines , 1987 .

[67]  J R Yates,et al.  Protein sequencing by tandem mass spectrometry. , 1986, Proceedings of the National Academy of Sciences of the United States of America.

[68]  R. S. Brown,et al.  Distorted amides as models for activated peptide N-C:O units produced during enzyme-catalyzed acyl transfer reactions. 1. The mechanism of hydrolysis of 3,4-dihydro-2-oxo-1,4-ethanoquinoline and 2,3,4,5-tetrahydro-2-oxo-1,5-ethanobenzazepine , 1986 .

[69]  G. Blackburn,et al.  Strain effects in acyl transfer reactions. Part I. The kinetics of hydrolysis of some N-aryl-lactams , 1972 .

[70]  S. Hünig The Modes of Reaction of Ambident Catioins , 1964 .