Transcriptional response of grapevine to infection with the fungal pathogen Lasiodiplodia theobromae

[1]  C. Tarnus,et al.  Secreted proteins produced by fungi associated with Botryosphaeria dieback trigger distinct defense responses in Vitis vinifera and Vitis rupestris cells , 2018, Protoplasma.

[2]  You-Liang Peng,et al.  Comparative genome and transcriptome analyses reveal adaptations to opportunistic infections in woody plant degrading pathogens of Botryosphaeriaceae , 2017, DNA research : an international journal for rapid publication of reports on genes and genomes.

[3]  Yufang Han,et al.  Comparative study of Arabidopsis PBS1 and a wheat PBS1 homolog helps understand the mechanism of PBS1 functioning in innate immunity , 2017, Scientific Reports.

[4]  D. Cantu,et al.  Neofusicoccum parvum Colonization of the Grapevine Woody Stem Triggers Asynchronous Host Responses at the Site of Infection and in the Leaves , 2017, Front. Plant Sci..

[5]  L. Mostert,et al.  Response of Vitis vinifera cell cultures to Eutypa lata and Trichoderma atroviride culture filtrates: expression of defence-related genes and phenotypes , 2017, Protoplasma.

[6]  Hong Feng,et al.  Transcriptome analysis confers a complex disease resistance network in wild rice Oryza meyeriana against Xanthomonas oryzae pv. oryzae , 2016, Scientific Reports.

[7]  Mark Lubell,et al.  Identifying economic hurdles to early adoption of preventative practices: The case of trunk diseases in California winegrape vineyards , 2016 .

[8]  A. Herrera-Estrella,et al.  Global transcriptional analysis suggests Lasiodiplodia theobromae pathogenicity factors involved in modulation of grapevine defensive response , 2016, BMC Genomics.

[9]  K. Hyde,et al.  Trail of decryption of molecular research on Botryosphaeriaceae in woody plants , 2016 .

[10]  K. Wydra,et al.  Advances in Plant Tolerance to Abiotic Stresses , 2016 .

[11]  Sebastian Schornack,et al.  Oomycete Interactions with Plants: Infection Strategies and Resistance Principles , 2015, Microbiology and Molecular Reviews.

[12]  A. Myburg,et al.  Transcriptome and hormone profiling reveals Eucalyptus grandis defence responses against Chrysoporthe austroafricana , 2015, BMC Genomics.

[13]  A. McElrone,et al.  Genes Expressed in Grapevine Leaves Reveal Latent Wood Infection by the Fungal Pathogen Neofusicoccum parvum , 2015, PloS one.

[14]  J. Bogs,et al.  The transcription factor VvWRKY33 is involved in the regulation of grapevine (Vitis vinifera) defense against the oomycete pathogen Plasmopara viticola. , 2015, Physiologia plantarum.

[15]  D. Guest,et al.  Tree immunity: growing old without antibodies. , 2014, Trends in plant science.

[16]  A. van Dorsselaer,et al.  Differential responses of three grapevine cultivars to Botryosphaeria dieback. , 2014, Phytopathology.

[17]  Björn Usadel,et al.  Trimmomatic: a flexible trimmer for Illumina sequence data , 2014, Bioinform..

[18]  T. Boller,et al.  The Pseudomonas type III effector HopQ1 activates cytokinin signaling and interferes with plant innate immunity. , 2014, The New phytologist.

[19]  D. McNear,et al.  Induced transcriptional profiling of phenylpropanoid pathway genes increased flavonoid and lignin content in Arabidopsis leaves in response to microbial products , 2014, BMC Plant Biology.

[20]  M. Wingfield,et al.  The Botryosphaeriaceae: genera and species known from culture , 2013, Studies in mycology.

[21]  J. Pouzoulet,et al.  Histopathological study of response of Vitis vinifera cv. Cabernet Sauvignon to bark and wood injury with and without inoculation by Phaeomoniella chlamydospora , 2013 .

[22]  K. Hyde,et al.  Species of Botryosphaeriaceae involved in grapevine dieback in China , 2013, Fungal Diversity.

[23]  C. Cheval,et al.  Calcium/calmodulin-mediated regulation of plant immunity. , 2013, Biochimica et biophysica acta.

[24]  Liang Xu,et al.  Characterization of the Pinus massoniana Transcriptional Response to Bursaphelenchus xylophilus Infection Using Suppression Subtractive Hybridization , 2013, International journal of molecular sciences.

[25]  K. A. Yadeta,et al.  The xylem as battleground for plant hosts and vascular wilt pathogens , 2013, Front. Plant Sci..

[26]  E. Abou-Mansour,et al.  Grapevine trunk diseases: complex and still poorly understood , 2013 .

[27]  C. Pieterse,et al.  Hormonal modulation of plant immunity. , 2012, Annual review of cell and developmental biology.

[28]  K. Hyde,et al.  Towards a natural classification of Botryosphaeriales , 2012, Fungal Diversity.

[29]  David R. Kelley,et al.  Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks , 2012, Nature Protocols.

[30]  H. Ridgway,et al.  Incidence and distribution of botryosphaeriaceous species in New Zealand vineyards , 2012, European Journal of Plant Pathology.

[31]  R. Sederoff,et al.  Chestnut resistance to the blight disease: insights from transcriptome analysis , 2012, BMC Plant Biology.

[32]  J. R. Úrbez-Torres,et al.  The status of Botryosphaeriaceae species infecting grapevines. , 2011 .

[33]  Shiping Wang,et al.  Insights into Auxin Signaling in Plant–Pathogen Interactions , 2011, Front. Plant Sci..

[34]  Lior Pachter,et al.  Identification of novel transcripts in annotated genomes using RNA-Seq , 2011, Bioinform..

[35]  Murray Grant,et al.  Hormone crosstalk in plant disease and defense: more than just jasmonate-salicylate antagonism. , 2011, Annual review of phytopathology.

[36]  S. Stephenson,et al.  From morphology to molecular biology: can we use sequence data to identify fungal endophytes? , 2011, Fungal Diversity.

[37]  T. Giraud,et al.  The evolution of species concepts and species recognition criteria in plant pathogenic fungi , 2011, Fungal Diversity.

[38]  W. Gubler,et al.  Susceptibility of grapevine pruning wounds to infection by Lasiodiplodia theobromae and Neofusicoccum parvum , 2011 .

[39]  S. Stephenson,et al.  Influence of seasonality on the occurrence of myxomycetes , 2011 .

[40]  M. Kojima,et al.  The cytokinin-activated transcription factor ARR2 promotes plant immunity via TGA3/NPR1-dependent salicylic acid signaling in Arabidopsis. , 2010, Developmental cell.

[41]  John P. Rathjen,et al.  Plant immunity: towards an integrated view of plant–pathogen interactions , 2010, Nature Reviews Genetics.

[42]  Cole Trapnell,et al.  Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. , 2010, Nature biotechnology.

[43]  Cole Trapnell,et al.  Role of Rodent Secondary Motor Cortex in Value-based Action Selection Nih Public Access Author Manuscript , 2006 .

[44]  P. Fourie,et al.  Temporal spore dispersal patterns of grapevine trunk pathogens in South Africa , 2010, European Journal of Plant Pathology.

[45]  E. Gomès,et al.  A transcriptomic study of grapevine (Vitis vinifera cv. Cabernet-Sauvignon) interaction with the vascular ascomycete fungus Eutypa lata , 2010, Journal of experimental botany.

[46]  C. Zipfel.  Early molecular events in PAMP-triggered immunity. , 2009, Current opinion in plant biology.

[47]  T. Boller,et al.  Innate Immunity in Plants: An Arms Race Between Pattern Recognition Receptors in Plants and Effectors in Microbial Pathogens , 2009, Science.

[48]  G. Selvaraj,et al.  Role of lignification in plant defense , 2009, Plant signaling & behavior.

[49]  Jonathan D. G. Jones,et al.  Role of plant hormones in plant defence responses , 2009, Plant Molecular Biology.

[50]  Minghui Gao,et al.  MEKK1, MKK1/MKK2 and MPK4 function together in a mitogen-activated protein kinase cascade to regulate innate immunity in plants , 2008, Cell Research.

[51]  J. Parker,et al.  Repression of the auxin response pathway increases Arabidopsis susceptibility to necrotrophic fungi. , 2008, Molecular plant.

[52]  D. Herms,et al.  Systemic induction of phloem secondary metabolism and its relationship to resistance to a canker pathogen in Austrian pine. , 2008, The New phytologist.

[53]  P. Crous,et al.  Morphological and molecular data reveal cryptic speciation in Lasiodiplodia theobromae. , 2008 .

[54]  P. He,et al.  Pseudomonas syringae type III effector AvrRpt2 alters Arabidopsis thaliana auxin physiology , 2007, Proceedings of the National Academy of Sciences.

[55]  S. Spoel,et al.  Regulation of tradeoffs between plant defenses against pathogens with different lifestyles , 2007, Proceedings of the National Academy of Sciences.

[56]  Jonathan D. G. Jones,et al.  A flagellin-induced complex of the receptor FLS2 and BAK1 initiates plant defence , 2007, Nature.

[57]  Jianjun Wang,et al.  Functional analysis of rice NPR1-like genes reveals that OsNPR1/NH1 is the rice orthologue conferring disease resistance with enhanced herbivore susceptibility. , 2007, Plant biotechnology journal.

[58]  Hirofumi Nakagami,et al.  A Mitogen-activated Protein Kinase Kinase Kinase Mediates Reactive Oxygen Species Homeostasis in Arabidopsis* , 2006, Journal of Biological Chemistry.

[59]  Patrick J Krysan,et al.  MEKK1 Is Required for flg22-Induced MPK4 Activation in Arabidopsis Plants1[C][W] , 2006, Plant Physiology.

[60]  Jonathan D. G. Jones,et al.  The plant immune system , 2006, Nature.

[61]  L. C. van Loon,et al.  Ethylene as a modulator of disease resistance in plants. , 2006, Trends in plant science.

[62]  J. Glazebrook.  Contrasting mechanisms of defense against biotrophic and necrotrophic pathogens. , 2005, Annual review of phytopathology.

[63]  M. G. Kim,et al.  Two Pseudomonas syringae Type III Effectors Inhibit RIN4-Regulated Basal Defense in Arabidopsis , 2005, Cell.

[64]  Jun-jun Liu,et al.  Characterization, expression and evolution of two novel subfamilies of Pinus monticola cDNAs encoding pathogenesis-related (PR)-10 proteins. , 2004, Tree physiology.

[65]  G. Martin,et al.  Identification of MAPKs and Their Possible MAPK Kinase Activators Involved in the Pto-mediated Defense Response of Tomato* , 2004, Journal of Biological Chemistry.

[66]  R. Sturrock,et al.  Gene Cloning and Tissue Expression Analysis of a PR-5 Thaumatin-Like Protein in Phellinus weirii-Infected Douglas-Fir. , 2004, Phytopathology.

[67]  A. Ortuño,et al.  Phenolic Compounds Have a Role in the Defence Mechanism Protecting Grapevine against the Fungi Involved in Petri Disease , 2004 .

[68]  S. Dinesh-Kumar,et al.  Molecular Chaperone Hsp90 Associates with Resistance Protein N and Its Signaling Proteins SGT1 and Rar1 to Modulate an Innate Immune Response in Plants* , 2004, Journal of Biological Chemistry.

[69]  A. Lönneborg,et al.  Isolation of the first putative peroxidase cDNA from a conifer and the local and systemic accumulation of related proteins upon pathogen infection , 2001, Plant Molecular Biology.

[70]  M. Wink.  Evolution of secondary metabolites from an ecological and molecular phylogenetic perspective. , 2003, Phytochemistry.

[71]  B. Poinssot,et al.  The endopolygalacturonase 1 from Botrytis cinerea activates grapevine defense reactions unrelated to its enzymatic activity. , 2003, Molecular plant-microbe interactions : MPMI.

[72]  Liangjiang Wang,et al.  The phenylpropanoid pathway and plant defence-a genomics perspective. , 2002, Molecular plant pathology.

[73]  Diane M. Martin,et al.  Methyl Jasmonate Induces Traumatic Resin Ducts, Terpenoid Resin Biosynthesis, and Terpenoid Accumulation in Developing Xylem of Norway Spruce Stems1 , 2002, Plant Physiology.

[74]  F. Ausubel,et al.  MAP kinase signalling cascade in Arabidopsis innate immunity , 2002, Nature.

[75]  Thomas D. Schmittgen,et al.  Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. , 2001, Methods.

[76]  D. Zamir,et al.  Genome-wide dissection of Fusarium resistance in tomato reveals multiple complex loci , 2001, Molecular Genetics and Genomics.

[77]  M. Sagi,et al.  Superoxide production by plant homologues of the gp91(phox) NADPH oxidase. Modulation of activity by calcium and by tobacco mosaic virus infection. , 2001, Plant physiology.

[78]  Y. Benjamini,et al.  Controlling the false discovery rate: a practical and powerful approach to multiple testing , 1995 .

[79]  Thomas D. Schmittgen,et al.  Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2 2 DD C T Method , 2022 .