Prediction of liver fibrosis and cirrhosis in chronic hepatitis B infection by serum proteomic fingerprinting: a pilot study.

BACKGROUND Most noninvasive predictive models of liver fibrosis are complicated and have suboptimal sensitivity. This study was designed to identify serum proteomic signatures associated with liver fibrosis and to develop a proteome-based fingerprinting model for prediction of liver fibrosis. METHODS Serum proteins from 46 patients with chronic hepatitis B (CHB) were profiled quantitatively on surface-enhanced laser desorption/ionization (SELDI) ProteinChip arrays. The identified liver fibrosis-associated proteomic fingerprint was used to construct an artificial neural network (ANN) model that produced a fibrosis index with a range of 0-6. The clinical value of this index was evaluated by leave-one-out cross-validation. RESULTS Thirty SELDI proteomic features were significantly associated with the degree of fibrosis. Cross-validation showed that the ANN fibrosis indices derived from the proteomic fingerprint strongly correlated with Ishak scores (r = 0.831) and were significantly different among stages of fibrosis. ROC curve areas in predicting significant fibrosis (Ishak score >or=3) and cirrhosis (Ishak score >or=5) were 0.906 and 0.921, respectively. At 89% specificity, the sensitivity of the ANN fibrosis index in predicting fibrosis was 89%. The sensitivity for prediction increased with degree of fibrosis, achieving 100% for patients with Ishak scores >4. The accuracy for prediction of cirrhosis was also 89%. Inclusion of International Normalized Ratio, total protein, bilirubin, alanine transaminase, and hemoglobin in the ANN model improved the predictive power, giving accuracies >90% for the prediction of fibrosis and cirrhosis. CONCLUSIONS A unique serum proteomic fingerprint is present in the sera of patients with fibrosis. An ANN fibrosis index derived from this fingerprint could differentiate between different stages of fibrosis and predict fibrosis and cirrhosis in CHB infection.

[1]  S. Friedman,et al.  Liver fibrosis -- from bench to bedside. , 2003, Journal of hepatology.

[2]  S Chevret,et al.  Biochemical markers of liver fibrosis in patients infected by hepatitis C virus: longitudinal validation in a randomized trial , 2002, Journal of viral hepatitis.

[3]  Benny Zee,et al.  Application of Classification Tree and Neural Network Algorithms to the Identification of Serological Liver Marker Profiles for the Diagnosis of Hepatocellular Carcinoma , 2001, Oncology.

[4]  Enrico Rossi,et al.  Validation of the FibroTest biochemical markers score in assessing liver fibrosis in hepatitis C patients. , 2003, Clinical chemistry.

[5]  H. Margolis,et al.  Recommendations for prevention and control of hepatitis C virus (HCV) infection and HCV-related chronic disease , 1998 .

[6]  A. Befeler,et al.  Hepatocellular carcinoma: diagnosis and treatment. , 2002, Gastroenterology.

[7]  A. Grant,et al.  Guidelines on the use of liver biopsy in clinical practice , 1999, Gut.

[8]  R. Soloway,et al.  Observer error and sampling variability tested in evaluation of hepatitis and cirrhosis by liver biopsy , 1971, The American Journal of Digestive Diseases.

[9]  D. Thabut,et al.  Noninvasive prediction of fibrosis in patients with chronic hepatitis C , 2003, Hepatology.

[10]  D. Seligson,et al.  Clinical Chemistry , 1965, Bulletin de la Societe de chimie biologique.

[11]  B. McMahon,et al.  Chronic hepatitis B: Update of recommendations , 2004, Hepatology.

[12]  R. Dwek,et al.  A strategy for the comparative analysis of serum proteomes for the discovery of biomarkers for hepatocellular carcinoma , 2003, Proteomics.

[13]  V. Paradis,et al.  Sampling variability of liver fibrosis in chronic hepatitis C , 2003, Hepatology.

[14]  T. Poon,et al.  Proteome analysis and its impact on the discovery of serological tumor markers. , 2001, Clinica chimica acta; international journal of clinical chemistry.

[15]  J. Kalbfleisch,et al.  A simple noninvasive index can predict both significant fibrosis and cirrhosis in patients with chronic hepatitis C , 2003, Hepatology.

[16]  J. Fruit,et al.  The role of liver biopsy in chronic hepatitis C , 2002 .

[17]  P. Scheuer Liver biopsy size matters in chronic hepatitis: Bigger is better , 2003, Hepatology.

[18]  H. El‐Serag,et al.  Risk factors for the rising rates of primary liver cancer in the United States. , 2000, Archives of internal medicine.

[19]  Llorenç Quintó,et al.  Identification of chronic hepatitis C patients without hepatic fibrosis by a simple predictive model , 2002, Hepatology.

[20]  Terence C W Poon,et al.  Serial Analysis of Plasma Proteomic Signatures in Pediatric Patients with Severe Acute Respiratory Syndrome and Correlation with Viral Load , 2004, Clinical chemistry.

[21]  Qing-Yu He,et al.  Serum biomarkers of hepatitis B virus infected liver inflammation: A proteomic study , 2003, Proteomics.

[22]  K. Ishak,et al.  Histological grading and staging of chronic hepatitis. , 1995 .

[23]  E. Diamandis Point: Proteomic patterns in biological fluids: do they represent the future of cancer diagnostics? , 2003, Clinical chemistry.

[24]  Francisco Azuaje,et al.  Genomic data sampling and its effect on classification performance assessment , 2003, BMC Bioinformatics.

[25]  J. Dienstag,et al.  The role of liver biopsy in chronic hepatitis C , 2002, Hepatology.

[26]  T. Poynard,et al.  Prediction of liver histological lesions with biochemical markers in patients with chronic hepatitis B. , 2003, Journal of hepatology.

[27]  N. Afdhal,et al.  Evaluation of Liver Fibrosis: A Concise Review , 2004, American Journal of Gastroenterology.

[28]  R. Tibshirani,et al.  Significance analysis of microarrays applied to the ionizing radiation response , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[29]  J. McHutchison,et al.  Validation of a simple predictive model for the identification of mild hepatic fibrosis in chronic hepatitis C patients. , 2003, Hepatology.

[30]  E. Diamandis Analysis of serum proteomic patterns for early cancer diagnosis: drawing attention to potential problems. , 2004, Journal of the National Cancer Institute.

[31]  E. Petricoin,et al.  Use of proteomic patterns in serum to identify ovarian cancer , 2002, The Lancet.

[32]  T. Yip,et al.  Comprehensive proteomic profiling identifies serum proteomic signatures for detection of hepatocellular carcinoma and its subtypes. , 2003, Clinical chemistry.

[33]  T. Poynard,et al.  Biochemical markers of liver fibrosis in patients with hepatitis C virus infection: a prospective study , 2001, The Lancet.

[34]  British Society of Gastroenterology , 1963 .