Changes in Structure and Functioning of Protist (Testate Amoebae) Communities Due to Conversion of Lowland Rainforest into Rubber and Oil Palm Plantations

Large areas of tropical rainforest are being converted to agricultural and plantation land uses, but little is known of biodiversity and ecological functioning under these replacement land uses. We investigated the effects of conversion of rainforest into jungle rubber, intensive rubber and oil palm plantations on testate amoebae, diverse and functionally important protists in litter and soil. Living testate amoebae species richness, density and biomass were all lower in replacement land uses than in rainforest, with the impact being more pronounced in litter than in soil. Similar abundances of species of high and low trophic level in rainforest suggest that trophic interactions are more balanced, with a high number of functionally redundant species, than in rubber and oil palm. In contrast, plantations had a low density of high trophic level species indicating losses of functions. This was particularly so in oil palm plantations. In addition, the relative density of species with siliceous shells was >50% lower in the litter layer of oil palm and rubber compared to rainforest and jungle rubber. This difference suggests that rainforest conversion changes biogenic silicon pools and increases silicon losses. Overall, the lower species richness, density and biomass in plantations than in rainforest, and the changes in the functional composition of the testate amoebae community, indicate detrimental effects of rainforest conversion on the structure and functioning of microbial food webs.

[1]  K. Wiegand,et al.  Ecological and socio-economic functions across tropical land use systems after rainforest conversion , 2016, Philosophical Transactions of the Royal Society B: Biological Sciences.

[2]  D. Schneider,et al.  Impact of Lowland Rainforest Transformation on Diversity and Composition of Soil Prokaryotic Communities in Sumatra (Indonesia) , 2015, Front. Microbiol..

[3]  T. Urich,et al.  Pack hunting by a common soil amoeba on nematodes. , 2015, Environmental microbiology.

[4]  E. Veldkamp,et al.  Soil fertility controls soil–atmosphere carbon dioxide and methane fluxes in a tropical landscape converted from lowland forest to rubber and oil palm plantations , 2015 .

[5]  Y. Kuzyakov,et al.  Losses of soil carbon by converting tropical forest to plantations: erosion and decomposition estimated by δ13C , 2015, Global change biology.

[6]  D. Edwards,et al.  Increasing human dominance of tropical forests , 2015, Science.

[7]  E. Veldkamp,et al.  Soil Nitrogen-Cycling Responses to Conversion of Lowland Forests to Oil Palm and Rubber Plantations in Sumatra, Indonesia , 2015, PloS one.

[8]  B. Klarner,et al.  Impact of tropical lowland rainforest conversion into rubber and oil palm plantations on soil microbial communities , 2015, Biology and Fertility of Soils.

[9]  M. Sommer,et al.  The protozoic Si pool in temperate forest ecosystems — Quantification, abiotic controls and interactions with earthworms , 2015 .

[10]  Malte Jochum,et al.  Consequences of tropical land use for multitrophic biodiversity and ecosystem functioning , 2014, Nature Communications.

[11]  Bjorn J. M. Robroek,et al.  Plant functional diversity drives niche‐size‐structure of dominant microbial consumers along a poor to extremely rich fen gradient , 2014 .

[12]  M. Sommer,et al.  Dynamics and drivers of the protozoic Si pool along a 10-year chronosequence of initial ecosystem states , 2014 .

[13]  A. Buttler,et al.  Seasonal patterns of testate amoeba diversity, community structure and species–environment relationships in four Sphagnum-dominated peatlands along a 1300 m altitudinal gradient in Switzerland , 2013 .

[14]  Valentyna Krashevska,et al.  Moderate changes in nutrient input alter tropical microbial and protist communities and belowground linkages , 2013, The ISME Journal.

[15]  V. Jassey,et al.  Above‐ and belowground linkages in Sphagnum peatland: climate warming affects plant‐microbial interactions , 2013, Global change biology.

[16]  S. Adl,et al.  Measuring soil protist respiration and ingestion rates using stable isotopes , 2013 .

[17]  L. Ruess,et al.  Use of the Signature Fatty Acid 16:1ω5 as a Tool to Determine the Distribution of Arbuscular Mycorrhizal Fungi in Soil , 2012, Journal of lipids.

[18]  Valentyna Krashevska,et al.  Consequences of exclusion of precipitation on microorganisms and microbial consumers in montane tropical rainforests , 2012, Oecologia.

[19]  S. Shimano,et al.  Characterizing the feeding habits of the testate amoebae Hyalosphenia papilio and Nebela tincta along a narrow "fen-bog" gradient using digestive vacuole content and 13C and 15N isotopic analyses. , 2012, Protist.

[20]  C. Bradshaw,et al.  Primary forests are irreplaceable for sustaining tropical biodiversity , 2011, Nature.

[21]  S. Adl,et al.  Protozoan Pulses Unveil Their Pivotal Position Within the Soil Food Web , 2011, Microbial Ecology.

[22]  I. Nijs,et al.  Does climate warming stimulate or inhibit soil protist communities? A test on testate amoebae in high-arctic tundra with free-air temperature increase. , 2011, Protist.

[23]  Floor I. Vandevenne,et al.  Historical land use change has lowered terrestrial silica mobilization. , 2010, Nature communications.

[24]  L. Ruess,et al.  The fat that matters: Soil food web analysis using fatty acids and their carbon stable isotope signature , 2010 .

[25]  E. Mitchell,et al.  Testate Amoebae and Nutrient Cycling with Particular Reference to Soils , 2010 .

[26]  Valentyna Krashevska,et al.  Carbon and nutrient limitation of soil microorganisms and microbial grazers in a tropical montane rain forest , 2010 .

[27]  V. B. Yap,et al.  The extent of undiscovered species in Southeast Asia , 2010, Biodiversity and Conservation.

[28]  Markku Kanninen,et al.  Landscape-scale variation in the structure and biomass of the hill dipterocarp forest of Sumatra: Implications for carbon stock assessments , 2010 .

[29]  L. P. Koh,et al.  Addressing the threats to biodiversity from oil-palm agriculture , 2010, Biodiversity and Conservation.

[30]  G. Likens,et al.  Deforestation causes increased dissolved silicate losses in the Hubbard Brook Experimental Forest , 2008 .

[31]  Valentyna Krashevska,et al.  Microorganisms as driving factors for the community structure of testate amoebae along an altitudinal transect in tropical mountain rain forests , 2008 .

[32]  F. Street-Perrott,et al.  Biogenic silica: a neglected component of the coupled global continental biogeochemical cycles of carbon and silicon , 2008 .

[33]  M. Hoshino,et al.  Silica and testate amoebae in a soil under pine–oak forest , 2007 .

[34]  R. Evershed,et al.  Fatty acid composition and change in Collembola fed differing diets: identification of trophic biomarkers , 2005 .

[35]  François Fauteux,et al.  Silicon and plant disease resistance against pathogenic fungi. , 2005, FEMS microbiology letters.

[36]  M. Clarholm Soil protozoa: an under-researched microbial group gaining momentum , 2005 .

[37]  J. Middelburg,et al.  Biomarker and carbon isotopic constraints on bacterial and algal community structure and functioning in a turbid, tidal estuary , 2005 .

[38]  M. Bonkowski Protozoa and plant growth: the microbial loop in soil revisited. , 2004, The New phytologist.

[39]  Rodolfo Dirzo,et al.  Global State of Biodiversity and Loss , 2003 .

[40]  E. Bååth,et al.  Comparison of soil fungal/bacterial ratios in a pH gradient using physiological and PLFA-based techniques , 2003 .

[41]  C. Amblard,et al.  Le régime alimentaire des Thécamoebiens (Protista, Sarcodina) , 2000 .

[42]  L. Zelles,et al.  Fatty acid patterns of phospholipids and lipopolysaccharides in the characterisation of microbial communities in soil: a review , 1999, Biology and Fertility of Soils.

[43]  L. Zelles Phospholipid fatty acid profiles in selected members of soil microbial communities. , 1997, Chemosphere.

[44]  E. Bååth,et al.  The use of phospholipid fatty acid analysis to estimate bacterial and fungal biomass in soil , 1996, Biology and Fertility of Soils.

[45]  S. M. Barrett,et al.  Essential polyunsaturated fatty acids from 14 species of diatom (Bacillariophyceae) , 1993 .

[46]  Th. Grospietsch Monographische studie der Gattung Hyalosphenia Stein , 1965, Hydrobiologia.

[47]  C.J.F. ter Braak,et al.  Canoco Reference Manual and User’s Guide: Software for Ordination (version 5.0) , 2012 .

[48]  T. Mieczan Effect of vegetation patchiness and site factors on distribution and diversity of testate amoebae and ciliates in peatbogs , 2010 .

[49]  W. Foissner,et al.  Testate amoebae as predators of nematodes , 2004, Biology and Fertility of Soils.

[50]  M. Rulík,et al.  DETERMINATION OF PHOSPHOLIPID FATTY ACIDS IN SEDIMENTS , 2003 .

[51]  N. Kroer,et al.  Microorganisms as indicators of soil health , 2002 .

[52]  Petr Šmilauer,et al.  CANOCO 4.5 Reference Manual and CanoDraw for Windows User's Guide: Software for Canonical Community Ordination , 2002 .

[53]  A. Francez,et al.  The Microbial Loop at the Surface of a Peatland:Structure, Function, and Impact of Nutrient Input , 1998, Microbial Ecology.

[54]  M. Coûteaux Relationships between testate amoebae and fungi in humus microcosms , 1985 .

[55]  Jean-François Ponge,et al.  Le genre Euglypha: essai de taxinomie numérique , 1979 .