The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis

Y. Van de Peer | A. Brun | I. V. Grigoriev | J. Schmutz | A. Salamov | P. Rouzé | E. Danchin | Y. Peer | J. Grimwood | J. Schmutz | S. Lucas | P. Brokstein | D. Ahrén | B. Henrissat | P. Richardson | J. Stajich | H. Quesneville | M. Muratet | G. Tuskan | J. Detter | S. DiFazio | I. Grigoriev | A. Aerts | D. Blaudez | M. Chalot | S. Duplessis | A. Kohler | B. Montanini | V. Pereda | I. Feussner | N. Rouhier | F. Martin | H. Shapiro | F. Gibon | J. Wuyts | E. Lindquist | M. Secq | P. Coutinho | L. Fraissinet-Tachet | R. Marmeisse | V. Legué | A. Tunlid | S. Kilaru | P. Courty | P. Hoegger | U. Kües | A. Brun | F. Duchaussoy | J. Gibon | M. Buée | B. Canbäck | D. Cohen | C. Delaruelle | A. Deveau | E. Lucic | P. Frey-Klett | C. Fourrey | G. Gay | P. Jain | J. Labbé | Y. C. Lin | F. Tacon | D. Melayah | U. Nehls | H. Niculita‐Hirzel | M. Peter | B. Rajashekar | M. Reich | T. Yin | G. Podila | A. Polle | P. Pukkila | I. Sanders | Antoine Danchin | A. Åhren | S. Labbé | F. Martin | A. Aerts | D. Ahrén | E. G. J. Danchin | F. Duchaussoy | J. Gibon | A. Kohler | E. Lindquist | V. Pereda | A. Salamov | H. J. Shapiro | J. Wuyts | D. Blaudez | M. Buée | P. Brokstein | B. Canbäck | D. Cohen | P. E. Courty | P. M. Coutinho | C. Delaruelle | J. C. Detter | A. Deveau | S. DiFazio | S. Duplessis | L. Fraissinet-Tachet | E. Lucic | P. Frey-Klett | C. Fourrey | I. Feussner | G. Gay | J. Grimwood | P. J. Hoegger | P. Jain | S. Kilaru | J. Labbé | V. Legué | F. Le Tacon | R. Marmeisse | D. Melayah | B. Montanini | M. Muratet | U. Nehls | H. Niculita-Hirzel | M. P. Oudot-Le Secq | M. Peter | H. Quesneville | B. Rajashekar | M. Reich | N. Rouhier | T. Yin | M. Chalot | B. Henrissat | U. Kües | S. Lucas | G. K. Podila | A. Polle | P. J. Pukkila | P. M. Richardson | P. Rouzé | I. R. Sanders | J. E. Stajich | A. Tunlid | G. Tuskan | J. Kohler | J. Deveau | Martín | F. Aerts | D. Courty | J. Lin | A. Shapiro | L. Lučić | U. Kues | M. Nehls | B. Cohen | A. Lindquist | L. Tacon | B. Muratet | A. Difazio | Y. Lin | S. Fraissinet-Tachet | Y. Van de Peer | F. Martin | D. Brun | E. G. J. Duchaussoy | E. Pereda | V. Salamov | H. Wuyts | J. Blaudez | D. Buee | M. Brokstein | P. Canback | P. M. Delaruelle | C. Detter | E. Frey-Klett | P. Fourrey | C. Feußner | I. Gay | G. Grimwood | J. Hoegger | P. Kilaru | Y. C. Legue | F. Marmeisse | R. Melayah | D. Montanini | U. Niculita-Hirzel | Oudot-Le Secq | N. Reich | A. Ahren

[1]  Thomas Schiex,et al.  EUGÈNE: An Eukaryotic Gene Finder That Combines Several Sources of Evidence , 2000, JOBIM.

[2]  R. Durbin,et al.  GeneWise and Genomewise. , 2004, Genome research.

[3]  Sarah Calvo,et al.  Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis , 2006, Nature.

[4]  Katherine H. Huang,et al.  Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78 , 2004, Nature Biotechnology.

[5]  Damien Blaudez,et al.  Ammonia: a candidate for nitrogen transfer at the mycorrhizal interface. , 2006, Trends in plant science.

[6]  R. Dean,et al.  An eight-cysteine-containing CFEM domain unique to a group of fungal membrane proteins. , 2003, Trends in biochemical sciences.

[7]  Sally E Smith and David J Read Mycorrhizal Symbiosis 2nd ed , 1997 .

[8]  M. J. Harrison,et al.  A Phosphate Transporter from Medicago truncatula Involved in the Acquisition of Phosphate Released by Arbuscular Mycorrhizal Fungi Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.004861. , 2002, The Plant Cell Online.

[9]  Jonathan E. Allen,et al.  The Genome of the Basidiomycetous Yeast and Human Pathogen Cryptococcus neoformans , 2005, Science.

[10]  M. Gribskov,et al.  The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray) , 2006, Science.

[11]  Charles J. Vaske,et al.  Gene prediction and verification in a compact genome with numerous small introns. , 2004, Genome research.

[12]  Susumu Goto,et al.  The KEGG resource for deciphering the genome , 2004, Nucleic Acids Res..

[13]  M. Hart,et al.  Food-web dynamics: Animal nitrogen swap for plant carbon , 2001, Nature.

[14]  U. Nehls,et al.  Sugar for my honey: carbohydrate partitioning in ectomycorrhizal symbiosis. , 2007, Phytochemistry.

[15]  Li-Jun Ma,et al.  Genomics of the fungal kingdom: insights into eukaryotic biology. , 2005, Genome research.

[16]  E. Blancaflor,et al.  Microtubule organization in root cells ofMedicago truncatula during development of an arbuscular mycorrhizal symbiosis withGlomus versiforme , 2005, Protoplasma.

[17]  U. Nehls,et al.  Sugar for My Honey: Carbohydrate Partitioning in Ectomycorrhizal Symbiosis , 2007 .

[18]  S. Trumbore,et al.  Spatial separation of litter decomposition and mycorrhizal nitrogen uptake in a boreal forest. , 2007, The New phytologist.

[19]  J. Pérez‐Moreno,et al.  Mycorrhizas and nutrient cycling in ecosystems - a journey towards relevance? , 2003, The New phytologist.

[20]  Jodie J. Yin,et al.  A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes , 2004, Genome Biology.

[21]  E. Neufeld,et al.  CARBOHYDRATE METABOLISM. , 1965, Annual review of biochemistry.

[22]  M. Ashburner,et al.  Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.

[23]  P. Dodds,et al.  Haustorially Expressed Secreted Proteins from Flax Rust Are Highly Enriched for Avirulence Elicitors[W] , 2005, The Plant Cell Online.

[24]  S. Brunak,et al.  Locating proteins in the cell using TargetP, SignalP and related tools , 2007, Nature Protocols.

[25]  K. Mendgen,et al.  Differential regulation of gene expression in the obligate biotrophic interaction of Uromyces fabae with its host Vicia faba. , 2001, Molecular plant-microbe interactions : MPMI.

[26]  Anton J. Enright,et al.  An efficient algorithm for large-scale detection of protein families. , 2002, Nucleic acids research.

[27]  V. Solovyev,et al.  Ab initio gene finding in Drosophila genomic DNA. , 2000, Genome research.

[28]  S. Kamoun A catalogue of the effector secretome of plant pathogenic oomycetes. , 2006, Annual review of phytopathology.

[29]  S. Duplessis,et al.  Living in harmony in the wood underground: ectomycorrhizal genomics. , 2007, Current opinion in plant biology.

[30]  Rolf Apweiler,et al.  InterProScan - an integration platform for the signature-recognition methods in InterPro , 2001, Bioinform..