Decision support system for fatty liver disease using GIST descriptors extracted from ultrasound images

Steatosis or fatty liver disease (FLD) is characterized by the abnormal retention of large vacuoles of neutral fat in the liver cells, either due to alcoholism or metabolic syndrome. Succession of FLD can lead to severe liver diseases such as hepatocellular carcinoma, cirrhosis and hepatic inflammation but it is a reversible disease if diagnosed early. Thus, computer-aided diagnostic tools play a very important role in the automated diagnosis of FLD. This paper focuses on the detection of steatosis and classification of steatotic livers from the normal using ultrasound images. The significant information from the image is extracted using GIST descriptor models. Marginal Fisher Analysis (MFA) integrated with Wilcoxon signed-rank test helps to eliminate the trivial features and provides the distinctive features for qualitative classification. Finally the clinically significant features are fused using classifiers such as decision tree (DT), support vector machine (SVM), adaBoost, k-nearest neighbor (kNN), probabilistic neural network (PNN), naive Bayes (NB), fuzzy Sugeno (FS), linear and quadratic discriminant analysis classification of normal and abnormal liver images. Results portray that PNN classifier can diagnose FLD with an average classification accuracy of 98%, 96% sensitivity, 100% specificity and Area Under Curve (AUC) of 0.9674 correctly.

[1]  J. Maxwell,et al.  Ultrasound scanning in the detection of hepatic fibrosis and steatosis. , 1986, British medical journal.

[2]  Wei-Yin Loh,et al.  Classification and regression trees , 2011, WIREs Data Mining Knowl. Discov..

[3]  Yoav Freund,et al.  Experiments with a New Boosting Algorithm , 1996, ICML.

[4]  Jiuqing Wan,et al.  Features extraction based on wavelet packet transform for B-mode ultrasound liver images , 2010, 2010 3rd International Congress on Image and Signal Processing.

[5]  Stephen Lin,et al.  Graph Embedding and Extensions: A General Framework for Dimensionality Reduction , 2007, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[6]  Taeho Hwang,et al.  FiGS: a filter-based gene selection workbench for microarray data , 2010, BMC Bioinformatics.

[7]  Cordelia Schmid,et al.  Evaluation of GIST descriptors for web-scale image search , 2009, CIVR '09.

[8]  D. Koutsouris,et al.  Computer assisted characterization of diffused liver disease using image texture analysis techniques on B-scan images , 1997, 1997 IEEE Nuclear Science Symposium Conference Record.

[9]  Adam A. Margolin,et al.  Assessing the clinical utility of cancer genomic and proteomic data across tumor types , 2014, Nature Biotechnology.

[10]  Mineichi Kudo,et al.  Entropy Criterion for Classifier-Independent Feature Selection , 2005, KES.

[11]  K. Mardia Measures of multivariate skewness and kurtosis with applications , 1970 .

[12]  Huan Liu,et al.  Handling Large Unsupervised Data via Dimensionality Reduction , 1999, 1999 ACM SIGMOD Workshop on Research Issues in Data Mining and Knowledge Discovery.

[13]  Shuicheng Yan,et al.  Graph Embedding and Extensions: A General Framework for Dimensionality Reduction , 2007 .

[14]  U Rajendra Acharya,et al.  Data mining framework for fatty liver disease classification in ultrasound: A hybrid feature extraction paradigm. , 2012, Medical physics.

[15]  Jian Yang,et al.  A General Exponential Framework for Dimensionality Reduction , 2014, IEEE Transactions on Image Processing.

[16]  Ron Kohavi,et al.  A Study of Cross-Validation and Bootstrap for Accuracy Estimation and Model Selection , 1995, IJCAI.

[17]  Vangelis Metsis,et al.  Spam Filtering with Naive Bayes - Which Naive Bayes? , 2006, CEAS.

[18]  Y. Jeng,et al.  Liver steatosis classification using high-frequency ultrasound. , 2005, Ultrasound in medicine & biology.

[19]  K. Ghosh,et al.  Corroborating the Subjective Classification of Ultrasound Images of Normal and Fatty Human Livers by the Radiologist through Texture Analysis and SOM , 2007, 15th International Conference on Advanced Computing and Communications (ADCOM 2007).

[20]  Chun-Ling Chuang,et al.  A hybrid diagnosis model for determining the types of the liver disease , 2010, Comput. Biol. Medicine.

[21]  U. Rajendra Acharya,et al.  Automated diagnosis of Coronary Artery Disease affected patients using LDA, PCA, ICA and Discrete Wavelet Transform , 2013, Knowl. Based Syst..

[22]  Li Jiang,et al.  Feature extraction based on semi-supervised kernel Marginal Fisher analysis and its application in bearing fault diagnosis , 2013 .

[23]  U. Rajendra Acharya,et al.  Ultrasound-based tissue characterization and classification of fatty liver disease: A screening and diagnostic paradigm , 2015, Knowl. Based Syst..

[24]  S. Lipsitz,et al.  An extension of the Wilcoxon rank sum test for complex sample survey data , 2012, Journal of the Royal Statistical Society. Series C, Applied statistics.

[25]  G. Box,et al.  A general distribution theory for a class of likelihood criteria. , 1949, Biometrika.

[26]  Rong-Ho Lin,et al.  An intelligent model for liver disease diagnosis , 2009, Artif. Intell. Medicine.

[27]  Mandeep Singh,et al.  A New Quantitative Metric for Liver Classification from Ultrasound Images , 2012 .

[28]  Ahmed M. Badawi,et al.  Fuzzy logic algorithm for quantitative tissue characterization of diffuse liver diseases from ultrasound images , 1999, Int. J. Medical Informatics.

[29]  Jyh-Shing Roger Jang,et al.  ANFIS: adaptive-network-based fuzzy inference system , 1993, IEEE Trans. Syst. Man Cybern..

[30]  T. Kailath The Divergence and Bhattacharyya Distance Measures in Signal Selection , 1967 .

[31]  Savita Gupta,et al.  An information fusion based method for liver classification using texture analysis of ultrasound images , 2014, Inf. Fusion.

[32]  Philip D. Wasserman,et al.  Advanced methods in neural computing , 1993, VNR computer library.

[33]  Sotiris Pavlopoulos,et al.  Computer assisted characterization of liver tissue using image texture analysis techniques on B-scan images , 1997, Proceedings of the 19th Annual International Conference of the IEEE Engineering in Medicine and Biology Society. 'Magnificent Milestones and Emerging Opportunities in Medical Engineering' (Cat. No.97CH36136).

[34]  Yung-Chang Chen,et al.  Ultrasonic Liver Tissues Classification by Fractal Feature Vector Based on M-band Wavelet Transform , 2001, IEEE Trans. Medical Imaging.

[35]  U. Rajendra Acharya,et al.  Automated EEG analysis of epilepsy: A review , 2013, Knowl. Based Syst..

[36]  Ziqiang Wang,et al.  Semisupervised Kernel Marginal Fisher Analysis for Face Recognition , 2013, TheScientificWorldJournal.

[37]  João M. Sanches,et al.  Fatty Liver Characterization and Classification by Ultrasound , 2009, IbPRIA.

[38]  Vojislav Kecman,et al.  Learning and Soft Computing: Support Vector Machines, Neural Networks, and Fuzzy Logic Models , 2001 .

[39]  Xiao-Mei Xu,et al.  An optimization criterion for generalized marginal Fisher analysis on undersampled problems , 2011, Int. J. Autom. Comput..

[40]  José Francisco Martínez Trinidad,et al.  Mining patterns for clustering on numerical datasets using unsupervised decision trees , 2015, Knowl. Based Syst..

[41]  N. Obuchowski Receiver operating characteristic curves and their use in radiology. , 2003, Radiology.

[42]  U. Rajendra Acharya,et al.  An integrated index for detection of Sudden Cardiac Death using Discrete Wavelet Transform and nonlinear features , 2015, Knowl. Based Syst..

[43]  Antonio Torralba,et al.  Modeling the Shape of the Scene: A Holistic Representation of the Spatial Envelope , 2001, International Journal of Computer Vision.

[44]  Y Yajima,et al.  Ultrasonographical diagnosis of fatty liver: significance of the liver-kidney contrast. , 1983, The Tohoku journal of experimental medicine.

[45]  Pedro Larrañaga,et al.  A review of feature selection techniques in bioinformatics , 2007, Bioinform..

[46]  U. Rajendra Acharya,et al.  Data mining technique for automated diagnosis of glaucoma using higher order spectra and wavelet energy features , 2012, Knowl. Based Syst..

[47]  K. Blekas,et al.  Fuzzy neural network-based texture analysis of ultrasonic images , 2000, IEEE Engineering in Medicine and Biology Magazine.