Residual feed intake divergence during the preweaning period is associated with unique hindgut microbiome and metabolome profiles in neonatal Holstein heifer calves

[1]  J. Loor,et al.  Supply of Methionine During Late-Pregnancy Alters Fecal Microbiota and Metabolome in Neonatal Dairy Calves Without Changes in Daily Feed Intake , 2019, Front. Microbiol..

[2]  A. León-Del-Río Biotin in metabolism, gene expression, and human disease , 2019, Journal of inherited metabolic disease.

[3]  C. V. Van Tassell,et al.  Defining the optimal period length and stage of growth or lactation to estimate residual feed intake in dairy cows. , 2019, Journal of dairy science.

[4]  S. Kaneko,et al.  Overuse of antianaerobic drug is associated with poor postchemotherapy prognosis of patients with hepatocellular carcinoma , 2019, International journal of cancer.

[5]  L. Guan,et al.  Assessment of rumen bacteria in dairy cows with varied milk protein yield. , 2019, Journal of dairy science.

[6]  N. López-Villalobos,et al.  Hot topic: Selecting cattle for low residual feed intake did not affect daily methane production but increased methane yield. , 2019, Journal of dairy science.

[7]  Xiaosong Hu,et al.  Resveratrol-induced gut microbiota reduces obesity in high-fat diet-fed mice , 2019, International Journal of Obesity.

[8]  Isabel Meister,et al.  Challenges, progress and promises of metabolite annotation for LC-MS-based metabolomics. , 2019, Current opinion in biotechnology.

[9]  L. Cantley,et al.  Toward a better understanding of folate metabolism in health and disease , 2018, The Journal of experimental medicine.

[10]  Weiyun Zhu,et al.  Effects of Early Intervention with Maternal Fecal Microbiota and Antibiotics on the Gut Microbiota and Metabolite Profiles of Piglets , 2018, Metabolites.

[11]  Yong Guo,et al.  Weaning Stress Perturbs Gut Microbiome and Its Metabolic Profile in Piglets , 2018, Scientific Reports.

[12]  D. Milea,et al.  A Metabolomics Profiling of Glaucoma Points to Mitochondrial Dysfunction, Senescence, and Polyamines Deficiency. , 2018, Investigative Ophthalmology and Visual Science.

[13]  C. Lammersfeld,et al.  Folate and Its Impact on Cancer Risk , 2018, Current Nutrition Reports.

[14]  Ping Liu,et al.  Effects of Oat Bran on Nutrient Digestibility, Intestinal Microbiota, and Inflammatory Responses in the Hindgut of Growing Pigs , 2018, International journal of molecular sciences.

[15]  J. Lowe,et al.  Microbial shifts in the swine nasal microbiota in response to parenteral antimicrobial administration. , 2018, Microbial pathogenesis.

[16]  A. Jankowska-Kulawy,et al.  The Regulatory Effects of Acetyl-CoA Distribution in the Healthy and Diseased Brain , 2018, Front. Cell. Neurosci..

[17]  G. Yellen Fueling thought: Management of glycolysis and oxidative phosphorylation in neuronal metabolism , 2018, The Journal of cell biology.

[18]  H. Hellmann,et al.  Vitamin B6 and Its Role in Cell Metabolism and Physiology , 2018, Cells.

[19]  David S. Wishart,et al.  MetaboAnalyst 4.0: towards more transparent and integrative metabolomics analysis , 2018, Nucleic Acids Res..

[20]  J. Loor,et al.  Association of residual feed intake with abundance of ruminal bacteria and biopolymer hydrolyzing enzyme activities during the peripartal period and early lactation in Holstein dairy cows , 2018, Journal of Animal Science and Biotechnology.

[21]  Jian Pan,et al.  Retracted Article: High-throughput metabolomics identifies serum metabolic signatures in acute kidney injury using LC-MS combined with pattern recognition approach , 2018, RSC advances.

[22]  C. Datt,et al.  Buffalo heifers selected for lower residual feed intake have lower feed intake, better dietary nitrogen utilisation and reduced enteric methane production , 2018, Journal of animal physiology and animal nutrition.

[23]  B. Hayes,et al.  Responses of dairy cows with divergent residual feed intake as calves to metabolic challenges during midlactation and the nonlactating period. , 2018, Journal of dairy science.

[24]  A. Faciola,et al.  Dietary protein reduction on microbial protein, amino acid digestibility, and body retention in beef cattle: 2. Amino acid intestinal absorption and their efficiency for whole-body deposition. , 2018, Journal of animal science.

[25]  G. Suen,et al.  Bacterial Community Dynamics across the Gastrointestinal Tracts of Dairy Calves during Preweaning Development , 2018, Applied and Environmental Microbiology.

[26]  L. O’Neill,et al.  A Role for the Krebs Cycle Intermediate Citrate in Metabolic Reprogramming in Innate Immunity and Inflammation , 2018, Front. Immunol..

[27]  Maojun Yang,et al.  Structure and mechanism of mitochondrial electron transport chain , 2018, Biomedical journal.

[28]  L. Guan,et al.  The Development of Microbiota and Metabolome in Small Intestine of Sika Deer (Cervus nippon) from Birth to Weaning , 2018, Front. Microbiol..

[29]  Jiachao Zhang,et al.  Lactobacillus plantarum HNU082-derived improvements in the intestinal microbiome prevent the development of hyperlipidaemia. , 2017, Food & function.

[30]  Minxiao Wang,et al.  Diversity and characterization of bacteria associated with the deep-sea hydrothermal vent crab Austinograea sp. comparing with those of two shallow-water crabs by 16S ribosomal DNA analysis , 2017, PloS one.

[31]  Wentian Liu,et al.  A review of the relationship between the gut microbiota and amino acid metabolism , 2017, Amino Acids.

[32]  L. Krause,et al.  Infections by human gastrointestinal helminths are associated with changes in faecal microbiota diversity and composition , 2017, PloS one.

[33]  M. Hattori,et al.  Intestinal Dysbiosis and Biotin Deprivation Induce Alopecia through Overgrowth of Lactobacillus murinus in Mice. , 2017, Cell reports.

[34]  P. Moughan,et al.  Amino Acid Absorption in the Large Intestine of Humans and Porcine Models. , 2017, The Journal of nutrition.

[35]  N. Juge,et al.  Introduction to the human gut microbiota , 2017, The Biochemical journal.

[36]  H. Jia,et al.  Variations in gut microbiota and fecal metabolic phenotype associated with depression by 16S rRNA gene sequencing and LC/MS‐based metabolomics , 2017, Journal of pharmaceutical and biomedical analysis.

[37]  Jasmine Chong,et al.  MicrobiomeAnalyst: a web-based tool for comprehensive statistical, visual and meta-analysis of microbiome data , 2017, Nucleic Acids Res..

[38]  Y. Liang,et al.  Growth performance, rumen fermentation, bacteria composition, and gene expressions involved in intracellular pH regulation of rumen epithelium in finishing Hu lambs differing in residual feed intake phenotype. , 2017, Journal of animal science.

[39]  Radhey S. Gupta,et al.  Novel molecular, structural and evolutionary characteristics of the phosphoketolases from bifidobacteria and Coriobacteriales , 2017, PloS one.

[40]  M. Mercadante,et al.  Digestion and metabolism of low and high residual feed intake Nellore bulls , 2017, Tropical Animal Health and Production.

[41]  E. Allen,et al.  Fatty Acid Biosynthesis Pathways in Methylomicrobium buryatense 5G(B1) , 2017, Front. Microbiol..

[42]  M. Mitchell,et al.  Prepartum body condition score and plane of nutrition affect the hepatic transcriptome during the transition period in grazing dairy cows , 2016, BMC Genomics.

[43]  T. Felix,et al.  Effects of timing and duration of test period and diet type on intake and feed efficiency of Charolais-sired cattle. , 2016, Journal of animal science.

[44]  J. Loor,et al.  Maternal rumen-protected methionine supplementation and its effect on blood and liver biomarkers of energy metabolism, inflammation, and oxidative stress in neonatal Holstein calves. , 2016, Journal of dairy science.

[45]  B. White,et al.  Specific microbiome-dependent mechanisms underlie the energy harvest efficiency of ruminants , 2016, The ISME Journal.

[46]  H. Blom,et al.  No Tryptophan, Tyrosine and Phenylalanine Abnormalities in Children with Attention-Deficit/Hyperactivity Disorder , 2016, PloS one.

[47]  S. Koo,et al.  Regulation of glucose metabolism from a liver-centric perspective , 2016, Experimental & Molecular Medicine.

[48]  R. P. McDonnell,et al.  Effect of divergence in phenotypic residual feed intake on methane emissions, ruminal fermentation, and apparent whole-tract digestibility of beef heifers across three contrasting diets. , 2016, Journal of animal science.

[49]  M. Goddard,et al.  Hot topic: Definition and implementation of a breeding value for feed efficiency in dairy cows. , 2015, Journal of dairy science.

[50]  G. Suen,et al.  Ruminal Bacterial Community Composition in Dairy Cows Is Dynamic over the Course of Two Lactations and Correlates with Feed Efficiency , 2015, Applied and Environmental Microbiology.

[51]  B. Finck,et al.  Mitochondrial pyruvate transport: a historical perspective and future research directions. , 2015, The Biochemical journal.

[52]  E. Connor Invited review: improving feed efficiency in dairy production: challenges and possibilities. , 2015, Animal : an international journal of animal bioscience.

[53]  S. Denman,et al.  The early impact of genomics and metagenomics on ruminal microbiology. , 2015, Annual review of animal biosciences.

[54]  R. Bicalho,et al.  Isolation and Characterization of Faecalibacterium prausnitzii from Calves and Piglets , 2014, PloS one.

[55]  M. Mohini,et al.  Nutrient utilisation and methane emissions in Sahiwal calves differing in residual feed intake , 2014, Archives of animal nutrition.

[56]  M. Akram Citric Acid Cycle and Role of its Intermediates in Metabolism , 2014, Cell Biochemistry and Biophysics.

[57]  B. Hayes,et al.  Holstein-Friesian calves selected for divergence in residual feed intake during growth exhibited significant but reduced residual feed intake divergence in their first lactation. , 2014, Journal of dairy science.

[58]  S. S. Kundu,et al.  Residual feed intake as a feed efficiency selection tool and its relationship with feed intake, performance and nutrient utilization in Murrah buffalo calves , 2014, Tropical Animal Health and Production.

[59]  Martin Krzywinski,et al.  Points of significance: Power and sample size , 2013, Nature Methods.

[60]  G. Oikonomou,et al.  Fecal Microbial Diversity in Pre-Weaned Dairy Calves as Described by Pyrosequencing of Metagenomic 16S rDNA. Associations of Faecalibacterium Species with Health and Growth , 2013, PloS one.

[61]  V. Teplova,et al.  Effect of phenolic acids of microbial origin on production of reactive oxygen species in mitochondria and neutrophils , 2012, Journal of Biomedical Science.

[62]  F. Hildebrand,et al.  Caspase deficiency alters the murine gut microbiome , 2011, Cell Death and Disease.

[63]  F. Madeo,et al.  Polyamines in aging and disease , 2011, Aging.

[64]  V. Baelum,et al.  Clustering of subgingival microbial species in adolescents with periodontitis. , 2011, European journal of oral sciences.

[65]  B. Ksas,et al.  Vitamin B6 deficient plants display increased sensitivity to high light and photo-oxidative stress , 2009, BMC Plant Biology.

[66]  J. Avruch,et al.  Amino acid regulation of TOR complex 1. , 2009, American journal of physiology. Endocrinology and metabolism.

[67]  J. Zempleni,et al.  Regulation of gene expression by biotin (review). , 2003, The Journal of nutritional biochemistry.

[68]  D. Wilson,et al.  Why are ruminal cellulolytic bacteria unable to digest cellulose at low pH? , 1996, Journal of dairy science.

[69]  S Shott,et al.  Power and Sample Size , 2014 .

[70]  J. Wünsche,et al.  [Absorption and utilization of amino acids infused into the cecum of growing swine. 3. Studies with 15N- and 14C-labeled isoleucine]. , 1983, Archiv fur Tierernahrung.

[71]  R. Schadereit,et al.  [Absorption and utilization of amino acids infused into the cecum of growing pigs. 2. 15N-labeled lysine]. , 1982, Archiv fur Tierernahrung.

[72]  S. Namioka,et al.  Appearance of 15N-labeled intestinal microbial amino acids in the venous blood of the pig colon. , 1979, American journal of veterinary research.

[73]  D. W. Robinson,et al.  Digestion and absorption of 15N-labelled microbial protein in the large intestine of the horse. , 1971, The British veterinary journal.

[74]  Robert M. Koch,et al.  Efficiency of Feed Use in Beef Cattle , 1963 .

[75]  M. Lund,et al.  Prediction and validation of residual feed intake and dry matter intake in Danish lactating dairy cows using mid-infrared spectroscopy of milk. , 2017, Journal of dairy science.

[76]  V. Baron,et al.  Residual feed intake adjusted for backfat thickness and feeding frequency is independent of fertility in beef heifers , 2011, Canadian Journal of Animal Science.

[77]  B. Malcolm,et al.  Future dairy farming systems in irrigation regions , 2005 .

[78]  R. Miller,et al.  Branched-chain amino acid metabolism. , 1984, Annual review of nutrition.