FADR: Functional-Anatomical Discriminative Regions for Rest fMRI Characterization

Resting state fMRI is a powerful method of functional brain imaging, which can reveal information of functional connectivity between regions during rest. In this paper, we present a novel method, called Functional-Anatomical Discriminative Regions FADR, for selecting a discriminative subset of functional-anatomical regions of the brain in order to characterize functional connectivity abnormalities in mental disorders. FADR integrates Independent Component Analysis with a sparse feature selection strategy, namely Elastic Net, in a supervised framework to extract a new sparse representation. In particular, ICA is used for obtaining group Resting State Networks and functional information is extracted from the subject-specific spatial maps. Anatomical information is incorporated to localize the discriminative regions. Thus, functional-anatomical information is combined in the new descriptor, which characterizes areas of different networks and carries discriminative power. Experimental results on the public database ADHD-200 validate the method being able to automatically extract discriminative areas and extending results from previous studies. The classification ability is evaluated showing that our method performs better than the average of the teams in the ADHD-200 Global Competition while giving relevant information about the disease by selecting the most discriminative regions at the same time.

[1]  Trevor Hastie,et al.  Regularization Paths for Generalized Linear Models via Coordinate Descent. , 2010, Journal of statistical software.

[2]  Dimitri Van De Ville,et al.  Machine Learning with Brain Graphs: Predictive Modeling Approaches for Functional Imaging in Systems Neuroscience , 2013, IEEE Signal Processing Magazine.

[3]  H. Zou,et al.  Regularization and variable selection via the elastic net , 2005 .

[4]  Christian Windischberger,et al.  Toward discovery science of human brain function , 2010, Proceedings of the National Academy of Sciences.

[5]  Vince D. Calhoun,et al.  A review of group ICA for fMRI data and ICA for joint inference of imaging, genetic, and ERP data , 2009, NeuroImage.

[6]  Yun Jiao,et al.  Altered regional homogeneity patterns in adults with attention-deficit hyperactivity disorder. , 2013, European journal of radiology.

[7]  J. Posner,et al.  Connecting the Dots: A Review of Resting Connectivity MRI Studies in Attention-Deficit/Hyperactivity Disorder , 2014, Neuropsychology Review.

[8]  Rainer Goebel,et al.  Combining multivariate voxel selection and support vector machines for mapping and classification of fMRI spatial patterns , 2008, NeuroImage.

[9]  O. Sporns,et al.  Complex brain networks: graph theoretical analysis of structural and functional systems , 2009, Nature Reviews Neuroscience.

[10]  Ulrich Müller,et al.  Hypoactivation in right inferior frontal cortex is specifically associated with motor response inhibition in adult ADHD , 2014, Human brain mapping.

[11]  Gaël Varoquaux,et al.  Learning and comparing functional connectomes across subjects , 2013, NeuroImage.

[12]  Tom M. Mitchell,et al.  Machine learning classifiers and fMRI: A tutorial overview , 2009, NeuroImage.