Plant Circadian Rhythms

The earth rotates on its axis every 24 h, with the result that any position on the earth's surface alternately faces toward or away from the sun—day and night. That the metabolism, physiology, and behavior of most organisms changes profoundly between day and night is obvious to even the most

[1]  T. Mizuno,et al.  Aberrant expression of the light-inducible and circadian-regulated APRR9 gene belonging to the circadian-associated APRR1/TOC1 quintet results in the phenotype of early flowering in Arabidopsis thaliana. , 2002, Plant & cell physiology.

[2]  C. R. McClung,et al.  The Neurospora clock gene frequency shares a sequence element with the Drosophila clock gene period , 1989, Nature.

[3]  S. Kay,et al.  A Role for LKP2 in the Circadian Clock of Arabidopsis Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.010332. , 2001, The Plant Cell Online.

[4]  P. Hardin.  Transcription Regulation within the Circadian Clock: The E-box and Beyond , 2004, Journal of biological rhythms.

[5]  C Robertson McClung,et al.  CIRCADIAN RHYTHMS IN PLANTS. , 2003, Annual review of plant physiology and plant molecular biology.

[6]  D. E. Somers,et al.  Circadian phase-specific degradation of the F-box protein ZTL is mediated by the proteasome , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[7]  Andrew J. Millar,et al.  The ELF4 gene controls circadian rhythms and flowering time in Arabidopsis thaliana , 2002, Nature.

[8]  G. Coupland,et al.  The Molecular Basis of Diversity in the Photoperiodic Flowering Responses of Arabidopsis and Rice , 2004, Plant Physiology.

[9]  S. Kay,et al.  Positive and Negative Factors Confer Phase-Specific Circadian Regulation of Transcription in Arabidopsisw⃞ , 2005, The Plant Cell Online.

[10]  Martin H. Levinson.  Longitude: The True Story of a Lone Genius Who Solved the Greatest Scientific Problem of His Time , 1997 .

[11]  Andrew J. Millar,et al.  Natural Allelic Variation in the Temperature-Compensation Mechanisms of the Arabidopsis thaliana Circadian Clock Sequence data from this article have been deposited with the EMBL/GenBank Data Libraries under accession nos. AY685131 and AY685132. , 2005, Genetics.

[12]  Jeffrey C. Hall,et al.  P-element transformation with period locus DNA restores rhythmicity to mutant, arrhythmic drosophila melanogaster , 1984, Cell.

[13]  J. Ecker,et al.  The phytochrome-interacting transcription factor, PIF3, acts early, selectively, and positively in light-induced chloroplast development. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[14]  J. W. Hastings,et al.  Effects of temperature upon diurnal rhythms. , 1960, Cold Spring Harbor symposia on quantitative biology.

[15]  C A Fuller,et al.  Neurospora circadian rhythms in space: a reexamination of the endogenous-exogenous question. , 1984, Science.

[16]  C S Pittendrigh,et al.  Temporal organization: reflections of a Darwinian clock-watcher. , 1993, Annual review of physiology.

[17]  Andrew J. Millar,et al.  Biological rhythms and photoperiodism in plants , 1998 .

[18]  S. Kay,et al.  The Plant Circadian Clock: Review of a Clockwork Arabidopsis , 2007 .

[19]  J. Chory,et al.  The Arabidopsis SRR1 gene mediates phyB signaling and is required for normal circadian clock function. , 2003, Genes & development.

[20]  ELF3 Encodes a Circadian Clock–Regulated Nuclear Protein That Functions in an Arabidopsis PHYB Signal Transduction Pathway , 2001, The Plant Cell Online.

[21]  D. Welsh,et al.  Real-time reporting of circadian-regulated gene expression by luciferase imaging in plants and mammalian cells. , 2005, Methods in enzymology.

[22]  E. Wagner,et al.  Rhythmic Processes in Plants , 1968 .

[23]  Peter Ruoff,et al.  TEMPERATURE EFFECT ON ENTRAINMENT, PHASE SHIFTING, AND AMPLITUDE OF CIRCADIAN CLOCKS AND ITS MOLECULAR BASES , 2002, Chronobiology international.

[24]  S. Kay,et al.  Circadian Control of cab Gene Transcription and mRNA Accumulation in Arabidopsis. , 1991, The Plant cell.

[25]  Takeshi Mizuno,et al.  The Arabidopsis pseudo-response regulators, PRR5 and PRR7, coordinately play essential roles for circadian clock function. , 2005, Plant & cell physiology.

[26]  G. Coupland,et al.  Photoperiodic flowering of Arabidopsis: integrating genetic and physiological approaches to characterization of the floral stimulus , 2005 .

[27]  J. Ecker,et al.  An Arabidopsis circadian clock component interacts with both CRY1 and phyB , 2001, Nature.

[28]  Stacey L. Harmer,et al.  Critical Role for CCA1 and LHY in Maintaining Circadian Rhythmicity in Arabidopsis , 2002, Current Biology.

[29]  Botanische Forschungen des Alexanderzuges , 1903, Nature.

[30]  Yves Gibon,et al.  Sugars and Circadian Regulation Make Major Contributions to the Global Regulation of Diurnal Gene Expression in Arabidopsis[W][OA] , 2005, The Plant Cell Online.

[31]  T. Mizuno,et al.  Aberrant expression of the Arabidopsis circadian-regulated APRR5 gene belonging to the APRR1/TOC1 quintet results in early flowering and hypersensitiveness to light in early photomorphogenesis. , 2002, Plant & cell physiology.

[32]  Michael F. Thomashow,et al.  Low Temperature Induction of Arabidopsis CBF1, 2, and 3 Is Gated by the Circadian Clock1 , 2005, Plant Physiology.

[33]  L. A. Sawyer,et al.  Natural variation in a Drosophila clock gene and temperature compensation. , 1997, Science.

[34]  C. R. McClung,et al.  What makes the Arabidopsis clock tick on time? A review on entrainment , 2005 .

[35]  A. Withrow,et al.  PHOTOPERIODIC CHLOROSIS IN TOMATO. , 1949, Plant physiology.

[36]  Michael F. Covington,et al.  ELF3 Modulates Resetting of the Circadian Clock in Arabidopsis , 2001, The Plant Cell Online.

[37]  D. E. Somers,et al.  Cloning of the Arabidopsis clock gene TOC1, an autoregulatory response regulator homolog. , 2000, Science.

[38]  Takeshi Mizuno,et al.  The APRR1/TOC1 quintet implicated in circadian rhythms of Arabidopsis thaliana: I. Characterization with APRR1-overexpressing plants. , 2002, Plant & cell physiology.

[39]  T. Mizuno,et al.  The APRR1/TOC1 quintet implicated in circadian rhythms of Arabidopsis thaliana: II. Characterization with CCA1-overexpressing plants. , 2002, Plant & cell physiology.

[40]  S. Kay,et al.  A circadian clock regulates transcription of the wheat Cab 1 gene. , 1988 .

[41]  T. Mizuno,et al.  Pseudo-Response Regulators (PRRs) or True Oscillator Components (TOCs). , 2005, Plant & cell physiology.

[42]  R. Sharrock,et al.  Patterns of Expression and Normalized Levels of the Five Arabidopsis Phytochromes1 , 2002, Plant Physiology.

[43]  C. Pittendrigh,et al.  The Entrainment of Circadian Oscillations by Light and Their Role as Photoperiodic Clocks , 1964, The American Naturalist.

[44]  Jeffrey C. Hall,et al.  Feedback of the Drosophila period gene product on circadian cycling of its messenger RNA levels , 1990, Nature.

[45]  C S Pittendrigh,et al.  ON TEMPERATURE INDEPENDENCE IN THE CLOCK SYSTEM CONTROLLING EMERGENCE TIME IN DROSOPHILA. , 1954, Proceedings of the National Academy of Sciences of the United States of America.

[46]  Erwin Bünning,et al.  The Physiological Clock , 1964, Heidelberg Science Library.

[47]  D. E. Somers,et al.  ZEITLUPE Encodes a Novel Clock-Associated PAS Protein from Arabidopsis , 2000, Cell.

[48]  P. Quail,et al.  Arabidopsis PSEUDO-RESPONSE REGULATOR7 Is a Signaling Intermediate in Phytochrome-Regulated Seedling Deetiolation and Phasing of the Circadian Clock Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.015065. , 2003, The Plant Cell Online.

[49]  David Alabadí,et al.  Dual Role of TOC1 in the Control of Circadian and Photomorphogenic Responses in Arabidopsis Online version contains Web-only data. Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.006734. , 2003, The Plant Cell Online.

[50]  Andrew J Millar,et al.  Input signals to the plant circadian clock. , 2003, Journal of experimental botany.

[51]  C. R. McClung,et al.  The Arabidopsis Circadian System , 2002, The arabidopsis book.

[52]  Hastings Jw,et al.  Effects of Temperature upon Diurnal Rhythms , 1960 .

[53]  D. E. Somers,et al.  Conditional Circadian Dysfunction of the Arabidopsis early-flowering 3 Mutant , 1996, Science.

[54]  D. R. Wagner,et al.  EARLY FLOWERING3 Encodes a Novel Protein That Regulates Circadian Clock Function and Flowering in Arabidopsis , 2001, The Plant Cell Online.

[55]  E. Tobin,et al.  Protein kinase CK2 interacts with and phosphorylates the Arabidopsis circadian clock-associated 1 protein. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[56]  Joanna Putterill,et al.  The late elongated hypocotyl Mutation of Arabidopsis Disrupts Circadian Rhythms and the Photoperiodic Control of Flowering , 1998, Cell.

[57]  J. Dunlap.  Molecular Bases for Circadian Clocks , 1999, Cell.

[58]  E. Huq,et al.  Direct targeting of light signals to a promoter element-bound transcription factor. , 2000, Science.

[59]  B. Bartel,et al.  FKF1, a Clock-Controlled Gene that Regulates the Transition to Flowering in Arabidopsis , 2000, Cell.

[60]  The Arabidopsis Genome Initiative.  Analysis of the genome sequence of the flowering plant Arabidopsis thaliana , 2000, Nature.

[61]  W. Hillman.  INJURY OF TOMATO PLANTS BY CONTINUOUS LIGHT AND UNFAVORABLE PHOTOPERIODIC CYCLES , 1956 .

[62]  J Chory,et al.  The regulation of circadian period by phototransduction pathways in Arabidopsis , 1995, Science.

[63]  A Hall,et al.  Circadian clock-regulated expression of phytochrome and cryptochrome genes in Arabidopsis. , 2001, Plant physiology.

[64]  R. Crain,et al.  Potassium Channels in Samanea saman Protoplasts Controlled by Phytochrome and the Biological Clock , 1993, Science.

[65]  M. W. Young,et al.  Posttranscriptional and Posttranslational Regulation of Clock Genes , 2004, Journal of biological rhythms.

[66]  Zhi-Yong Wang,et al.  Constitutive Expression of the CIRCADIAN CLOCK ASSOCIATED 1 (CCA1) Gene Disrupts Circadian Rhythms and Suppresses Its Own Expression , 1998, Cell.

[67]  D. Ravenscroft,et al.  Photoreceptor Regulation of CONSTANS Protein in Photoperiodic Flowering , 2004, Science.

[68]  H. Allard,et al.  EFFECT OF THE RELATIVE LENGTH OF DAY AND NIGHT AND OTHER FACTORS OF THE ENVIRONMENT ON GROWTH AND REPRODUCTION IN PLANTS1 , 1920 .

[69]  Curt P. Richter,et al.  A behavioristic study of the activity of the rat , 1922 .

[70]  K. Bennett,et al.  The power of movement in plants. , 1998, Trends in ecology & evolution.

[71]  C. Johnson.  Testing the adaptive value of circadian systems. , 2005, Methods in enzymology.

[72]  A. Déjardin,et al.  Tension wood as a model for functional genomics of wood formation. , 2004, The New phytologist.

[73]  S. Kay,et al.  Orchestrated transcription of key pathways in Arabidopsis by the circadian clock. , 2000, Science.

[74]  I. Carré,et al.  DET1 regulates the proteasomal degradation of LHY, a component of the Arabidopsis circadian clock , 2005, Plant Molecular Biology.

[75]  S. Kay,et al.  Molecular basis of seasonal time measurement in Arabidopsis , 2002, Nature.

[76]  Jose L Pruneda-Paz,et al.  LUX ARRHYTHMO encodes a Myb domain protein essential for circadian rhythms. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[77]  Takeshi Mizuno,et al.  PSEUDO-RESPONSE REGULATORS, PRR9, PRR7 and PRR5, together play essential roles close to the circadian clock of Arabidopsis thaliana. , 2005, Plant & cell physiology.

[78]  A. Millar,et al.  Circadian dysfunction causes aberrant hypocotyl elongation patterns in Arabidopsis. , 1999, The Plant journal : for cell and molecular biology.

[79]  C. R. McClung,et al.  Enhanced Fitness Conferred by Naturally Occurring Variation in the Circadian Clock , 2003, Science.

[80]  C. R. McClung,et al.  The out of phase 1 Mutant Defines a Role for PHYB in Circadian Phase Control in Arabidopsis1 , 2002, Plant Physiology.

[81]  S. Kay,et al.  FKF1 F-Box Protein Mediates Cyclic Degradation of a Repressor of CONSTANS in Arabidopsis , 2005, Science.

[82]  Paul E. Brown,et al.  Extension of a genetic network model by iterative experimentation and mathematical analysis , 2005, Molecular systems biology.

[83]  C Robertson McClung,et al.  PSEUDO-RESPONSE REGULATOR 7 and 9 Are Partially Redundant Genes Essential for the Temperature Responsiveness of the Arabidopsis Circadian Clock , 2005, The Plant Cell Online.

[84]  D. E. Somers,et al.  Control of circadian rhythms and photoperiodic flowering by the Arabidopsis GIGANTEA gene. , 1999, Science.

[85]  M. Koornneef,et al.  A fortunate choice: the history of Arabidopsis as a model plant , 2002, Nature Reviews Genetics.

[86]  R. Amasino,et al.  Natural allelic variation identifies new genes in the Arabidopsis circadian system. , 1999, The Plant journal : for cell and molecular biology.

[87]  D. E. Somers,et al.  The F-Box Protein ZEITLUPE Confers Dosage-Dependent Control on the Circadian Clock, Photomorphogenesis, and Flowering Time Online version contains Web-only data. , 2004, The Plant Cell Online.

[88]  E. Tobin,et al.  Circadian Rhythms Confer a Higher Level of Fitness to Arabidopsis Plants1 , 2002, Plant Physiology.

[89]  E. Bünning.  Opening Address: Biological Clocks , 1960 .

[90]  Alex A. R. Webb,et al.  Independent circadian regulation of assimilation and stomatal conductance in the ztl-1 mutant of Arabidopsis , 2004 .

[91]  Takao Kondo,et al.  No Transcription-Translation Feedback in Circadian Rhythm of KaiC Phosphorylation , 2005, Science.

[92]  Anthony Hall,et al.  The TIME FOR COFFEE Gene Maintains the Amplitude and Timing of Arabidopsis Circadian Clocks Online version contains Web-only data. Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.013730. , 2003, The Plant Cell Online.

[93]  V. Bruce.  Mutants of the biological clock in Chlamydomonas reinhardi. , 1972, Genetics.

[94]  E. Tobin,et al.  Loss of the circadian clock-associated protein 1 in Arabidopsis results in altered clock-regulated gene expression. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[95]  T. Mizuno,et al.  Characterization of circadian-associated APRR3 pseudo-response regulator belonging to the APRR1/TOC1 quintet in Arabidopsis thaliana. , 2004, Plant & cell physiology.

[96]  C. Strayer,et al.  Circadian clock mutants in Arabidopsis identified by luciferase imaging , 1995, Science.

[97]  C. R. McClung,et al.  Enhancer Trapping Reveals Widespread Circadian Clock Transcriptional Control in Arabidopsis1[w] , 2003, Plant Physiology.

[98]  Tsuyoshi Mizoguchi,et al.  LHY and CCA1 are partially redundant genes required to maintain circadian rhythms in Arabidopsis. , 2002, Developmental cell.

[99]  Anthony Hall,et al.  The ELF3 zeitnehmer regulates light signalling to the circadian clock , 2000, Nature.

[100]  R J Konopka,et al.  Clock mutants of Drosophila melanogaster. , 1971, Proceedings of the National Academy of Sciences of the United States of America.

[101]  Stacey L. Harmer,et al.  Overlapping and Distinct Roles of PRR7 and PRR9 in the Arabidopsis Circadian Clock , 2005, Current Biology.

[102]  D. E. Somers,et al.  Formation of an SCF(ZTL) complex is required for proper regulation of circadian timing. , 2004, The Plant journal : for cell and molecular biology.

[103]  C. R. McClung,et al.  The Arabidopsis thaliana Clock , 2004, Journal of biological rhythms.

[104]  C. Kyriacou,et al.  A latitudinal cline in a Drosophila clock gene , 1992, Proceedings of the Royal Society of London. Series B: Biological Sciences.

[105]  Hitoshi Onouchi,et al.  CONSTANS mediates between the circadian clock and the control of flowering in Arabidopsis , 2001, Nature.

[106]  K. Kloppstech.  Diurnal and circadian rhythmicity in the expression of light-induced plant nuclear messenger RNAs , 1985, Planta.

[107]  J. F. Feldman,et al.  Isolation of circadian clock mutants of Neurospora crassa. , 1973, Genetics.

[108]  C. R. McClung,et al.  SPINDLY and GIGANTEA Interact and Act in Arabidopsis thaliana Pathways Involved in Light Responses, Flowering, and Rhythms in Cotyledon Movements , 2004, The Plant Cell Online.

[109]  Steve A. Kay,et al.  Reciprocal Regulation Between TOC1 and LHY/CCA1 Within the Arabidopsis Circadian Clock , 2001, Science.

[110]  M. W. Young,et al.  Molecular genetics of a biological clock in Drosophila. , 1984, Proceedings of the National Academy of Sciences of the United States of America.

[111]  Robert J. Schaffer,et al.  Microarray Analysis of Diurnal and Circadian-Regulated Genes in Arabidopsis , 2001, The Plant Cell.

[112]  H. Greppin,et al.  Arabidopsis thaliana floral stem elongation: Evidence for an endogenous circadian rhythm , 1998 .

[113]  E. Tobin,et al.  The protein kinase CK2 is involved in regulation of circadian rhythms in Arabidopsis. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[114]  Anthony Hall,et al.  Plant Circadian Clocks Increase Photosynthesis, Growth, Survival, and Competitive Advantage , 2005, Science.

[115]  T. Kondo,et al.  Reconstitution of Circadian Oscillation of Cyanobacterial KaiC Phosphorylation in Vitro , 2005, Science.

[116]  S. Kay,et al.  FKF1 is essential for photoperiodic-specific light signalling in Arabidopsis , 2003, Nature.

[117]  E. Tobin,et al.  CK2 phosphorylation of CCA1 is necessary for its circadian oscillator function in Arabidopsis. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[118]  H. R. Highkin,et al.  Possible Interaction between Light-dark Cycles and Endogenous Daily Rhythms on the Growth of Tomato Plants. , 1954, Plant physiology.

[119]  S. Kay,et al.  A novel circadian phenotype based on firefly luciferase expression in transgenic plants. , 1992, The Plant cell.

[120]  C. R. McClung,et al.  Phase-Specific Circadian Clock Regulatory Elements in Arabidopsis1 , 2002, Plant Physiology.

[121]  D. E. Somers,et al.  Targeted degradation of TOC1 by ZTL modulates circadian function in Arabidopsis thaliana , 2003, Nature.

[122]  J. Cherry,et al.  Identification of unstable transcripts in Arabidopsis by cDNA microarray analysis: Rapid decay is associated with a group of touch- and specific clock-controlled genes , 2002, Proceedings of the National Academy of Sciences of the United States of America.