The effect of sediment grain properties and porewater flow on microbial abundance and respiration in permeable sediments

[1]  Stefan Wuertz,et al.  Bacteria and archaea on Earth and their abundance in biofilms , 2019, Nature Reviews Microbiology.

[2]  R. Amann,et al.  Microbial life on a sand grain: from bulk sediment to single grains , 2017, The ISME Journal.

[3]  Bo Zhou,et al.  Three-dimensional sphericity, roundness and fractal dimension of sand particles , 2018 .

[4]  Tim Engelhardt,et al.  Virus Dynamics Are Influenced by Season, Tides and Advective Transport in Intertidal, Permeable Sediments , 2017, Front. Microbiol..

[5]  C. Winter,et al.  Regulation of benthic oxygen fluxes in permeable sediments of the coastal ocean , 2017 .

[6]  M. Kuypers,et al.  Denitrifying community in coastal sediments performs aerobic and anaerobic respiration simultaneously , 2017, The ISME Journal.

[7]  M. Strous,et al.  Syntrophic linkage between predatory Carpediemonas and specific prokaryotic populations , 2017, The ISME Journal.

[8]  Laura L. Federlein,et al.  Importance of advective mass transfer and sediment surface area for streambed microbial communities , 2017 .

[9]  C. Winter,et al.  Coupled nitrification–denitrification leads to extensive N loss in subtidal permeable sediments , 2016 .

[10]  S. Ahmerkamp.  Regulation of oxygen dynamics by transport processes and microbial respiration in sandy sediments , 2016 .

[11]  C. R. Lovell,et al.  Microbial Surface Colonization and Biofilm Development in Marine Environments , 2015, Microbiology and Molecular Reviews.

[12]  C. Winter,et al.  The impact of bedform migration on benthic oxygen fluxes , 2015 .

[13]  S. Grant,et al.  First-order contaminant removal in the hyporheic zone of streams: physical insights from a simple analytical model. , 2014, Environmental science & technology.

[14]  M. Kuypers,et al.  The Fate of Nitrate in Intertidal Permeable Sediments , 2014, PloS one.

[15]  P. Berg,et al.  Benthic exchange and biogeochemical cycling in permeable sediments. , 2014, Annual review of marine science.

[16]  M. Cardenas,et al.  Transport zonation limits coupled nitrification-denitrification in permeable sediments. , 2013, Environmental science & technology.

[17]  P. Cook,et al.  The kinetics of denitrification in permeable sediments , 2013, Biogeochemistry.

[18]  B. Eyre,et al.  Influence of porewater advection on denitrification in carbonate sands: Evidence from repacked sediment column experiments , 2012 .

[19]  Jacob Bear,et al.  Modelling and Applications of Transport Phenomena in Porous Media , 2012 .

[20]  Felix Janssen,et al.  A comparative experimental and multiphysics computational fluid dynamics study of coupled surface–subsurface flow in bed forms , 2012 .

[21]  B. Eyre,et al.  The driving forces of porewater and groundwater flow in permeable coastal sediments: a review , 2012 .

[22]  M. Kuypers,et al.  Intensive and extensive nitrogen loss from intertidal permeable sediments of the Wadden Sea , 2012 .

[23]  Christopher Quince,et al.  Diversity and dynamics of rare and of resident bacterial populations in coastal sands , 2011, The ISME Journal.

[24]  J. Crawford,et al.  Siderophores from neighboring organisms promote the growth of uncultured bacteria. , 2010, Chemistry & biology.

[25]  F. Schreiber,et al.  Aerobic denitrification in permeable Wadden Sea sediments , 2010, The ISME Journal.

[26]  A. Boetius,et al.  Temporal variations in microbial activities and carbon turnover in subtidal sandy sediments , 2009 .

[27]  B. Eyre,et al.  Denitrification efficiency for defining critical loads of carbon in shallow coastal ecosystems , 2009, Hydrobiologia.

[28]  Wayne S Gardner,et al.  Respiration and denitrification in permeable continental shelf deposits on the South Atlantic Bight: N2:Ar and isotope pairing measurements in sediment column experiments , 2008 .

[29]  Wayne S Gardner,et al.  Respiration and denitrification in permeable continental shelf deposits on the South Atlantic Bight: Rates of carbon and nitrogen cycling from sediment column experiments , 2007 .

[30]  R. Amann,et al.  Microbial community structure of sandy intertidal sediments in the North Sea, Sylt-Rømø Basin, Wadden Sea. , 2006, Systematic and applied microbiology.

[31]  Markus Huettel,et al.  Benthic Oxygen Consumption and Organic Matter Turnover in Organic-poor, Permeable Shelf Sands , 2006 .

[32]  J. Berg,et al.  The human impact in the German Bight: Eutrophication during three decades (1962–1991) , 1993, Helgoländer Meeresuntersuchungen.

[33]  U. Witte,et al.  Pore‐water advection and solute fluxes in permeable marine sediments (II): Benthic respiration at three sandy sites with different permeabilities (German Bight, North Sea) , 2005 .

[34]  G. Rheinheimer,et al.  Scanning electron microscopy and epifluorescence investigation of bacterial colonization of marine sand sediments , 1977, Microbial Ecology.

[35]  C. Wild,et al.  In situ measurements of advective solute transport in permeable shelf sands , 2004 .

[36]  C. Reimers,et al.  Activity and distribution of bacterial populations in Middle Atlantic Bight shelf sands. , 2003, FEMS microbiology ecology.

[37]  B. Thamdrup,et al.  Production of N2 through Anaerobic Ammonium Oxidation Coupled to Nitrate Reduction in Marine Sediments , 2002, Applied and Environmental Microbiology.

[38]  F. Sansone,et al.  Permeable marine sediments: Overturning an old paradigm , 2001, Eos, Transactions American Geophysical Union.

[39]  T. Kuwae,et al.  Determination of Abundance and Biovolume of Bacteria in Sediments by Dual Staining with 4′,6-Diamidino-2-Phenylindole and Acridine Orange: Relationship to Dispersion Treatment and Sediment Characteristics , 1999, Applied and Environmental Microbiology.

[40]  A. Roychoudhury,et al.  A plug flow-through reactor for studying biogeochemical reactions in undisturbed aquatic sediments , 1998 .

[41]  U. Berninger,et al.  Vertical distribution of benthic ciliates in response to the oxygen concentration in an intertidal North Sea sediment , 1995 .

[42]  L. Mayer.  SURFACE AREA CONTROL OF ORGANIC CARBON ACCUMULATION IN CONTINENTAL SHELF SEDIMENTS , 1994 .

[43]  R. Braman,et al.  Nanogram nitrite and nitrate determination in environmental and biological materials by vanadium (III) reduction with chemiluminescence detection. , 1989, Analytical chemistry.

[44]  Douglas C. Miller,et al.  Abrasion effects on microbes in sandy sediments , 1989 .

[45]  R. Jahnke.  A model of microenvironments in deep‐sea sediments: Formation and effects on porewater profiles1 , 1985 .

[46]  L. Mayer,et al.  Specific surface areas in coastal sediments: Relationships with other textural factors , 1982 .

[47]  D. White,et al.  Effect of Silicate Grain Shape, Structure, and Location on the Biomass and Community Structure of Colonizing Marine Microbiota , 1981, Applied and environmental microbiology.

[48]  B. B. Jørgensen,et al.  Bacterial sulfate reduction within reduced microniches of oxidized marine sediments , 1977 .

[49]  Norman G. Dale.  Bacteria in intertidal sediments: Factors related to their distribution1 , 1974 .

[50]  Norman Cl.  Bacteria in intertidal sediments: Factors rclatcd to their distribution1 , 1974 .

[51]  P. K. Weyl,et al.  Influence of Texture on Porosity and Permeability of Unconsolidated Sand , 1973 .

[52]  E. Batoosingh,et al.  Direct and indirect observations of bacteria on marine pebbles. , 1971, Canadian journal of microbiology.

[53]  E. H. Anthony,et al.  Particle size, water-stable aggregates, and bacterial populations in lake sediments. , 1971, Canadian journal of microbiology.

[54]  R. C. Macridis.  A review , 1963 .

[55]  A. C. Redfield.  The biological control of chemical factors in the environment. , 1960, Science progress.

[56]  W. C. Krumbein,et al.  Permeability as a Function of the Size Parameters of Unconsolidated Sand , 1943 .

[57]  H. J. Fraser.  Experimental Study of the Porosity and Permeability of Clastic Sediments , 1935, The Journal of Geology.