A meta-proteomics approach to study the interspecies interactions affecting microbial biofilm development in a model community
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S. Sørensen | B. Svensson | P. Hägglund | Jakob Herschend | M. Burmølle | A. Marquard | Zacharias B. V. Damholt
[1] S. Sørensen,et al. Low‐abundant species facilitates specific spatial organization that promotes multispecies biofilm formation , 2017, Environmental microbiology.
[2] S. Sørensen,et al. Distinct gene expression profile of Xanthomonas retroflexus engaged in synergistic multispecies biofilm formation , 2016, The ISME Journal.
[3] L. Jensen,et al. Metaproteomics of saliva identifies human protein markers specific for individuals with periodontitis and dental caries compared to orally healthy controls , 2016, PeerJ.
[4] Dazhi Wang,et al. Environmental Microbial Community Proteomics: Status, Challenges and Perspectives , 2016, International journal of molecular sciences.
[5] Marco Y. Hein,et al. The Perseus computational platform for comprehensive analysis of (prote)omics data , 2016, Nature Methods.
[6] Philipp E. Geyer,et al. Ultra-deep and quantitative saliva proteome reveals dynamics of the oral microbiome , 2016, Genome Medicine.
[7] José A. Dianes,et al. 2016 update of the PRIDE database and its related tools , 2016, Nucleic Acids Res..
[8] S. Sørensen,et al. Interspecific bacterial interactions are reflected in multispecies biofilm spatial organization , 2016 .
[9] Fusheng Chen,et al. Global insights into acetic acid resistance mechanisms and genetic stability of Acetobacter pasteurianus strains by comparative genomics , 2015, Scientific Reports.
[10] J. Grossmann,et al. Proteomic profiling of host-biofilm interactions in an oral infection model resembling the periodontal pocket , 2015, Scientific Reports.
[11] Adriana Ambrosini,et al. Plant growth-promoting bacteria as inoculants in agricultural soils , 2015, Genetics and molecular biology.
[12] Etienne Yergeau,et al. Metaproteomics of aquatic microbial communities in a deep and stratified estuary , 2015, Proteomics.
[13] S. Aymerich,et al. Pathogens protection against the action of disinfectants in multispecies biofilms , 2015, Front. Microbiol..
[14] F. Fang,et al. Extracellular protein analysis of activated sludge and their functions in wastewater treatment plant by shotgun proteomics , 2015, Scientific Reports.
[15] Ryan S. Mueller,et al. Strain-resolved microbial community proteomics reveals simultaneous aerobic and anaerobic function during gastrointestinal tract colonization of a preterm infant , 2015, Front. Microbiol..
[16] B. Xi,et al. Metaproteomics reveals major microbial players and their biodegradation functions in a large-scale aerobic composting plant , 2015, Microbial biotechnology.
[17] A. Papadimitropoulos,et al. Establishment of an oral infection model resembling the periodontal pocket in a perfusion bioreactor system , 2015, Virulence.
[18] Annika C. Mosier,et al. Elevated temperature alters proteomic responses of individual organisms within a biofilm community , 2014, The ISME Journal.
[19] S. Sørensen,et al. High prevalence of biofilm synergy among bacterial soil isolates in cocultures indicates bacterial interspecific cooperation , 2014, The ISME Journal.
[20] K. Konstantinidis,et al. Evaluation of metatranscriptomic protocols and application to the study of freshwater microbial communities. , 2014, Environmental microbiology reports.
[21] Marco Y. Hein,et al. Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ * , 2014, Molecular & Cellular Proteomics.
[22] Oscar Cerda,et al. Characterization of the Arginine Decarboxylase Gene (ORF HP0422, speA) Involved in Acid Tolerance in Helicobacter pylori , 2014, Helicobacter.
[23] M. Mann,et al. Minimal, encapsulated proteomic-sample processing applied to copy-number estimation in eukaryotic cells , 2014, Nature Methods.
[24] Fangfang Xia,et al. The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST) , 2013, Nucleic Acids Res..
[25] Stefan Schuster,et al. Fitness and stability of obligate cross-feeding interactions that emerge upon gene loss in bacteria , 2013, The ISME Journal.
[26] S. Sørensen,et al. High-Throughput Screening of Multispecies Biofilm Formation and Quantitative PCR-Based Assessment of Individual Species Proportions, Useful for Exploring Interspecific Bacterial Interactions , 2014, Microbial Ecology.
[27] B. Kjellerup,et al. Applications of biofilms in bioremediation and biotransformation of persistent organic pollutants, pharmaceuticals/personal care products, and heavy metals , 2013, Applied Microbiology and Biotechnology.
[28] Thomas Bjarnsholt,et al. The in vivo biofilm. , 2013, Trends in microbiology.
[29] W. Giordano,et al. The Role of Bacterial Biofilms and Surface Components in Plant-Bacterial Associations , 2013, International journal of molecular sciences.
[30] Chongle Pan,et al. Metaproteomics: harnessing the power of high performance mass spectrometry to identify the suite of proteins that control metabolic activities in microbial communities. , 2013, Analytical chemistry.
[31] Amadou Sarr,et al. Loss in microbial diversity affects nitrogen cycling in soil , 2013, The ISME Journal.
[32] Wenying Shou,et al. Strong inter-population cooperation leads to partner intermixing in microbial communities , 2013, eLife.
[33] S. Sørensen,et al. The ability of soil bacteria to receive the conjugative IncP1 plasmid, pKJK10, is different in a mixed community compared to single strains. , 2013, FEMS microbiology letters.
[34] Richard J. Lavallee,et al. Optimized fast and sensitive acquisition methods for shotgun proteomics on a quadrupole orbitrap mass spectrometer. , 2012, Journal of proteome research.
[35] M. Selbach,et al. Global quantification of mammalian gene expression control , 2011, Nature.
[36] Sheng Lin,et al. Characterization of metaproteomics in crop rhizospheric soil. , 2011, Journal of proteome research.
[37] V. Cooper,et al. Ecological succession in long-term experimentally evolved biofilms produces synergistic communities , 2011, The ISME Journal.
[38] M. Mann,et al. Andromeda: a peptide search engine integrated into the MaxQuant environment. , 2011, Journal of proteome research.
[39] M. Vieira,et al. A review of current and emergent biofilm control strategies , 2010 .
[40] Chongle Pan,et al. Cultivation and quantitative proteomic analyses of acidophilic microbial communities , 2010, The ISME Journal.
[41] J. Keller,et al. Initial development and structure of biofilms on microbial fuel cell anodes , 2010, BMC Microbiology.
[42] Hadley Wickham,et al. ggplot2 - Elegant Graphics for Data Analysis (2nd Edition) , 2017 .
[43] Paul Stoodley,et al. Evolving concepts in biofilm infections , 2009, Cellular microbiology.
[44] Vincent J. Denef,et al. Systems Biology: Functional analysis of natural microbial consortia using community proteomics , 2009, Nature Reviews Microbiology.
[45] P. Stewart,et al. Escherichia coli O157:H7 requires colonizing partner to adhere and persist in a capillary flow cell. , 2009, Environmental science & technology.
[46] M. Mann,et al. MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification , 2008, Nature Biotechnology.
[47] Rick L. Stevens,et al. The RAST Server: Rapid Annotations using Subsystems Technology , 2008, BMC Genomics.
[48] C. Fuqua,et al. Biofilm formation by plant-associated bacteria. , 2007, Annual review of microbiology.
[49] Martin A Hamilton,et al. Comparative evaluation of biofilm disinfectant efficacy tests. , 2007, Journal of microbiological methods.
[50] Steven P Gygi,et al. Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry , 2007, Nature Methods.
[51] J. R. Lobry,et al. SeqinR 1.0-2: A Contributed Package to the R Project for Statistical Computing Devoted to Biological Sequences Retrieval and Analysis , 2007 .
[52] A. Griffin,et al. Social evolution theory for microorganisms , 2006, Nature Reviews Microbiology.
[53] J. Slonczewski,et al. Polyamine stress at high pH in Escherichia coli K-12 , 2005, BMC Microbiology.
[54] Lennart Martens,et al. DBToolkit: processing protein databases for peptide-centric proteomics , 2005, Bioinform..
[55] John W. Foster,et al. Escherichia coli Glutamate- and Arginine-Dependent Acid Resistance Systems Increase Internal pH and Reverse Transmembrane Potential , 2004, Journal of bacteriology.
[56] J. Frank,et al. Behavior of Listeria monocytogenes in a Pseudomonas putida biofilm on a condensate-forming surface. , 2004, Journal of food protection.
[57] J. Bruno,et al. Inclusion of facilitation into ecological theory , 2003 .
[58] R. Tibshirani,et al. Significance analysis of microarrays applied to the ionizing radiation response , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[59] C. Potera. Studying slime. , 1998, Environmental health perspectives.
[60] J. Knappe,et al. Reconstitution and Characterization of the Polynuclear Iron-Sulfur Cluster in Pyruvate Formate-lyase-activating Enzyme , 1998, The Journal of Biological Chemistry.
[61] Y. Benjamini,et al. Controlling the false discovery rate: a practical and powerful approach to multiple testing , 1995 .
[62] H. A. Barker,et al. Lysine 2,3-aminomutase. Purification and properties of a pyridoxal phosphate and S-adenosylmethionine-activated enzyme. , 1970, The Journal of biological chemistry.