Metabolic enhancement of mammalian developmental pausing

The quest to model and modulate embryonic development became a recent cornerstone of stem cell and developmental biology. Mammalian developmental timing is adjustable in vivo by preserving preimplantation embryos in a dormant state called diapause. Inhibition of the growth regulator mTOR (mTORi) pauses mouse development in vitro, yet constraints to pause duration are unrecognized. By comparing the response of embryonic and extraembryonic stem cells to mTORi-induced pausing, we identified lipid usage as a bottleneck to developmental pausing. Enhancing fatty acid oxidation (FAO) boosts embryo longevity, while blocking it reduces the pausing capacity. Genomic and metabolic analyses of single embryos point toward a deeper dormant state in FAO-enhanced pausing and reveal a link between lipid metabolism and embryo morphology. Our results lift a constraint on in vitro embryo survival and suggest that lipid metabolism may be a critical metabolic transition relevant for longevity and stem cell function across tissues. One-Sentence Summary Facilitating fatty acid oxidation by carnitine supplementation enhances mTOR inhibition-mediated developmental pausing.

[1]  V. Gladyshev,et al.  In vivo cyclic induction of the FOXM1 transcription factor delays natural and progeroid aging phenotypes and extends healthspan , 2022, Nature Aging.

[2]  S. Kuang,et al.  Lipid droplet dynamics regulate adult muscle stem cell fate , 2022, Cell reports.

[3]  Param Priya Singh,et al.  Evolution of diapause in the African turquoise killifish by remodeling ancient gene regulatory landscape , 2021, bioRxiv.

[4]  Patrick J. Paddison,et al.  Neural G0: a quiescent‐like state found in neuroepithelial‐derived cells and glioma , 2021, Molecular systems biology.

[5]  M. Potente,et al.  Control of endothelial quiescence by FOXO-regulated metabolites , 2021, Nature cell biology.

[6]  Jason D. Buenrostro,et al.  Corticosterone inhibits GAS6 to govern hair follicle stem-cell quiescence , 2021, Nature.

[7]  M. Zavortink,et al.  Glial Hedgehog signalling and lipid metabolism regulate neural stem cell proliferation in Drosophila , 2021, EMBO reports.

[8]  T. Haaf,et al.  Lipid droplets in mammalian eggs are utilized during embryonic diapause , 2021, Proceedings of the National Academy of Sciences.

[9]  Tom H. Cheung,et al.  Stem cell quiescence: the challenging path to activation , 2021, Development.

[10]  Y. Dou,et al.  ER associated degradation preserves hematopoietic stem cell quiescence and self-renewal by restricting mTOR activity. , 2020, Blood.

[11]  I. Cheeseman,et al.  Cellular Mechanisms and Regulation of Quiescence. , 2020, Developmental cell.

[12]  L. Lindström,et al.  The Diapause Lipidomes of Three Closely Related Beetle Species Reveal Mechanisms for Tolerating Energetic and Cold Stress in High-Latitude Seasonal Environments , 2020, Frontiers in Physiology.

[13]  A. Dhar,et al.  A brief review on solid lipid nanoparticles: part and parcel of contemporary drug delivery systems , 2020, RSC advances.

[14]  B. Garcia,et al.  Histone Acetyltransferase MOF Blocks Acquisition of Quiescence in Ground-State ESCs through Activating Fatty Acid Oxidation. , 2020, Cell stem cell.

[15]  R. Krisher,et al.  A novel culture medium with reduced nutrient concentrations supports the development and viability of mouse embryos , 2020, Scientific Reports.

[16]  W. L. Ruzzo,et al.  Metabolic Control over mTOR-Dependent Diapause-like State. , 2020, Developmental cell.

[17]  Satoshi Tsukamoto,et al.  Synthesis and maintenance of lipid droplets are essential for mouse preimplantation embryonic development , 2019, Development.

[18]  Muhammad A. Hagras,et al.  Mutations in NDUFS1 Cause Metabolic Reprogramming and Disruption of the Electron Transfer , 2019, Cells.

[19]  D. Meierhofer Acylcarnitine profiling by low-resolution LC-MS , 2019, PloS one.

[20]  S. M. Chambers,et al.  Lipid Deprivation Induces a Stable, Naive-to-Primed Intermediate State of Pluripotency in Human PSCs. , 2019, Cell stem cell.

[21]  David J. Jörg,et al.  Early Stem Cell Aging in the Mature Brain , 2019, bioRxiv.

[22]  T. Fujimori,et al.  Distinct dormancy progression depending on embryonic regions during mouse embryonic diapause†. , 2019, Biology of reproduction.

[23]  J. L. Muñoz-Bravo,et al.  Loss of postnatal quiescence of neural stem cells through mTOR activation upon genetic removal of cysteine string protein-α , 2019, Proceedings of the National Academy of Sciences.

[24]  A. Brunet,et al.  Linking Lipid Metabolism to Chromatin Regulation in Aging. , 2019, Trends in cell biology.

[25]  A. Oudenaarden,et al.  Embryonic signals perpetuate polar-like trophoblast stem cells and pattern the blastocyst axis , 2019, bioRxiv.

[26]  J. Keasling,et al.  Viscous control of cellular respiration by membrane lipid composition , 2018, Science.

[27]  E. Yoshizawa,et al.  Defining Lineage-Specific Membrane Fluidity Signatures that Regulate Adhesion Kinetics , 2018, Stem cell reports.

[28]  David S. Wishart,et al.  MetaboAnalyst 4.0: towards more transparent and integrative metabolomics analysis , 2018, Nucleic Acids Res..

[29]  C. June,et al.  The CPT1a inhibitor, etomoxir induces severe oxidative stress at commonly used concentrations , 2018, Scientific Reports.

[30]  Michael T. McManus,et al.  The Transcriptionally Permissive Chromatin State of Embryonic Stem Cells Is Acutely Tuned to Translational Output. , 2018, Cell stem cell.

[31]  W. Huber,et al.  Proteome-wide identification of ubiquitin interactions using UbIA-MS , 2018, Nature Protocols.

[32]  M. Renfree,et al.  The enigma of embryonic diapause , 2017, Development.

[33]  S. Mayor,et al.  Wnt and Hedgehog: Secretion of Lipid-Modified Morphogens. , 2017, Trends in cell biology.

[34]  P. Carmeliet,et al.  A Fatty Acid Oxidation-Dependent Metabolic Shift Regulates Adult Neural Stem Cell Activity , 2017, Cell reports.

[35]  Wolfgang Maier,et al.  C. elegans DAF-16/FOXO interacts with TGF-ß/BMP signaling to induce germline tumor formation via mTORC1 activation , 2017, PLoS genetics.

[36]  B. Murphy,et al.  Embryo arrest and reactivation: potential candidates controlling embryonic diapause in the tammar wallaby and mink , 2017, Biology of Reproduction.

[37]  Jun S. Song,et al.  Inhibition of mTor induces a paused pluripotent state , 2016, Nature.

[38]  A. Kundaje,et al.  Characterization of the direct targets of FOXO transcription factors throughout evolution , 2016, Aging cell.

[39]  D. Meierhofer,et al.  Ataxin-2 (Atxn2)-Knock-Out Mice Show Branched Chain Amino Acids and Fatty Acids Pathway Alterations* , 2016, Molecular & Cellular Proteomics.

[40]  J. Nichols,et al.  Lineage-Specific Profiling Delineates the Emergence and Progression of Naive Pluripotency in Mammalian Embryogenesis , 2015, Developmental cell.

[41]  Adam A. Margolin,et al.  The metabolome regulates the epigenetic landscape during naïve to primed human embryonic stem cell transition , 2015, Nature Cell Biology.

[42]  N. Saini,et al.  Fatty acid transport protein-2 inhibitor Grassofermata/CB5 protects cells against lipid accumulation and toxicity. , 2015, Biochemical and biophysical research communications.

[43]  Eiki Takahashi,et al.  The significance of membrane fluidity of feeder cell-derived substrates for maintenance of iPS cell stemness , 2015, Scientific Reports.

[44]  D. Meierhofer,et al.  Metabolome and proteome profiling of complex I deficiency induced by rotenone. , 2015, Journal of proteome research.

[45]  M. Mann,et al.  Minimal, encapsulated proteomic-sample processing applied to copy-number estimation in eukaryotic cells , 2014, Nature Methods.

[46]  Nevan J. Krogan,et al.  A lipid E-MAP identifies Ubx2 as a critical regulator of lipid saturation and lipid bilayer stress. , 2013, Molecular cell.

[47]  T. N. Schachter,et al.  Kinetics of nuclear-cytoplasmic translocation of Foxo1 and Foxo3A in adult skeletal muscle fibers. , 2012, American journal of physiology. Cell physiology.

[48]  P. Pandolfi,et al.  A PML–PPAR-δ pathway for fatty acid oxidation regulates hematopoietic stem cell maintenance , 2012, Nature Medicine.

[49]  J. Nichols,et al.  Pluripotency in the embryo and in culture. , 2012, Cold Spring Harbor perspectives in biology.

[50]  Subhash D. Katewa,et al.  Intramyocellular fatty-acid metabolism plays a critical role in mediating responses to dietary restriction in Drosophila melanogaster. , 2012, Cell metabolism.

[51]  Johannes E. Schindelin,et al.  Fiji: an open-source platform for biological-image analysis , 2012, Nature Methods.

[52]  Johannes E. Schindelin,et al.  TrakEM2 Software for Neural Circuit Reconstruction , 2012, PloS one.

[53]  S. Kousteni FoxO1, the transcriptional chief of staff of energy metabolism. , 2012, Bone.

[54]  Xuefei Gao,et al.  Carnitine palmitoyltransferase 1A prevents fatty acid-induced adipocyte dysfunction through suppression of c-Jun N-terminal kinase. , 2011, The Biochemical journal.

[55]  T. Shimokawa,et al.  Discovery of Novel Forkhead Box O1 Inhibitors for Treating Type 2 Diabetes: Improvement of Fasting Glycemia in Diabetic db/db Mice , 2010, Molecular Pharmacology.

[56]  Michael G. Kharas,et al.  Constitutively active AKT depletes hematopoietic stem cells and induces leukemia in mice. , 2010, Blood.

[57]  L. Chodosh,et al.  mTOR mediates Wnt-induced epidermal stem cell exhaustion and aging. , 2009, Cell stem cell.

[58]  K. Kandror,et al.  FoxO1 Controls Insulin-dependent Adipose Triglyceride Lipase (ATGL) Expression and Lipolysis in Adipocytes* , 2009, Journal of Biological Chemistry.

[59]  Lu Wang,et al.  mTOR supports long-term self-renewal and suppresses mesoderm and endoderm activities of human embryonic stem cells , 2009, Proceedings of the National Academy of Sciences.

[60]  Lennart Martens,et al.  PRIDE: The proteomics identifications database , 2005, Proteomics.

[61]  M. Ko,et al.  Global gene expression analysis identifies molecular pathways distinguishing blastocyst dormancy and activation. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[62]  Marten P Smidt,et al.  The ins and outs of FoxO shuttling: mechanisms of FoxO translocation and transcriptional regulation. , 2004, The Biochemical journal.

[63]  Jeffrey W. Smith,et al.  Orlistat Is a Novel Inhibitor of Fatty Acid Synthase with Antitumor Activity , 2004, Cancer Research.

[64]  C. Kenyon,et al.  Regulation of the Caenorhabditis elegans longevity protein DAF-16 by insulin/IGF-1 and germline signaling , 2001, Nature Genetics.

[65]  J. Rossant,et al.  Promotion of trophoblast stem cell proliferation by FGF4. , 1998, Science.

[66]  D. Harrington A class of rank test procedures for censored survival data , 1982 .

[67]  G. Martin,et al.  Isolation of a pluripotent cell line from early mouse embryos cultured in medium conditioned by teratocarcinoma stem cells. , 1981, Proceedings of the National Academy of Sciences of the United States of America.

[68]  M. Kaufman,et al.  Establishment in culture of pluripotential cells from mouse embryos , 1981, Nature.

[69]  Hiroyuki Ogata,et al.  KEGG: Kyoto Encyclopedia of Genes and Genomes , 1999, Nucleic Acids Res..

[70]  Supplemental Information 2: Kyoto Encyclopedia of genes and genomes. , 2022 .