Biosynthesis and incorporation of side-chain-truncated lignin monomers to reduce lignin polymerization and enhance saccharification.

Lignocellulosic biomass is utilized as a renewable feedstock in various agro-industrial activities. Lignin is an aromatic, hydrophobic and mildly branched polymer integrally associated with polysaccharides within the biomass, which negatively affects their extraction and hydrolysis during industrial processing. Engineering the monomer composition of lignins offers an attractive option towards new lignins with reduced recalcitrance. The presented work describes a new strategy developed in Arabidopsis for the overproduction of rare lignin monomers to reduce lignin polymerization degree (DP). Biosynthesis of these 'DP reducers' is achieved by expressing a bacterial hydroxycinnamoyl-CoA hydratase-lyase (HCHL) in lignifying tissues of Arabidopsis inflorescence stems. HCHL cleaves the propanoid side-chain of hydroxycinnamoyl-CoA lignin precursors to produce the corresponding hydroxybenzaldehydes so that plant stems expressing HCHL accumulate in their cell wall higher amounts of hydroxybenzaldehyde and hydroxybenzoate derivatives. Engineered plants with intermediate HCHL activity levels show no reduction in total lignin, sugar content or biomass yield compared with wild-type plants. However, cell wall characterization of extract-free stems by thioacidolysis and by 2D-NMR revealed an increased amount of unusual C₆C₁ lignin monomers most likely linked with lignin as end-groups. Moreover the analysis of lignin isolated from these plants using size-exclusion chromatography revealed a reduced molecular weight. Furthermore, these engineered lines show saccharification improvement of pretreated stem cell walls. Therefore, we conclude that enhancing the biosynthesis and incorporation of C₆C₁ monomers ('DP reducers') into lignin polymers represents a promising strategy to reduce lignin DP and to decrease cell wall recalcitrance to enzymatic hydrolysis.

[1]  Guillaume Pilot,et al.  A Membrane Protein/Signaling Protein Interaction Network for Arabidopsis Version AMPv2 , 2010, Front. Physio..

[2]  Xinbin Dai,et al.  Genome-wide analysis of phenylpropanoid defence pathways. , 2010, Molecular plant pathology.

[3]  Mark F. Davis,et al.  Lignin content in natural Populus variants affects sugar release , 2011, Proceedings of the National Academy of Sciences.

[4]  John Ralph,et al.  The Effects on Lignin Structure of Overexpression of Ferulate 5-Hydroxylase in Hybrid Poplar1[W] , 2009, Plant Physiology.

[5]  A. Svatoš,et al.  Universally occurring phenylpropanoid and species-specific indolic metabolites in infected and uninfected Arabidopsis thaliana roots and leaves. , 2004, Phytochemistry.

[6]  M Pean,et al.  Elucidation of new structures in lignins of CAD- and COMT-deficient plants by NMR. , 2001, Phytochemistry.

[7]  John Ralph,et al.  Advances in modifying lignin for enhanced biofuel production. , 2010, Current opinion in plant biology.

[8]  Richard A Dixon,et al.  Lignin modification improves fermentable sugar yields for biofuel production , 2007, Nature Biotechnology.

[9]  G. Pelletier,et al.  In planta Agrobacterium-mediated transformation of adult Arabidopsis thaliana plants by vacuum infiltration. , 1998, Methods in molecular biology.

[10]  J. Gregory,et al.  Metabolism of the Folate Precursor p-Aminobenzoate in Plants , 2008, Journal of Biological Chemistry.

[11]  C. Chapple,et al.  The genetics of lignin biosynthesis: connecting genotype to phenotype. , 2010, Annual review of genetics.

[12]  C. Bunce,et al.  Characterization of two novel aldo-keto reductases from Arabidopsis: expression patterns, broad substrate specificity, and an open active-site structure suggest a role in toxicant metabolism following stress. , 2009, Journal of molecular biology.

[13]  C. Lapierre,et al.  New insights into the molecular architecture of hardwood lignins by chemical degradative methods , 1995 .

[14]  R. Dixon,et al.  Silencing of 4-coumarate:coenzyme A ligase in switchgrass leads to reduced lignin content and improved fermentable sugar yields for biofuel production. , 2011, The New phytologist.

[15]  Jing-Ke Weng,et al.  Improvement of biomass through lignin modification. , 2008, The Plant journal : for cell and molecular biology.

[16]  M. Allen,et al.  Characteristics of plant cell walls affecting intake and digestibility of forages by ruminants. , 1995, Journal of animal science.

[17]  J. Ralph,et al.  Solution-state 2D NMR of ball-milled plant cell wall gels in DMSO-d(6)/pyridine-d(5). , 2010, Organic & biomolecular chemistry.

[18]  J. Ralph,et al.  Solution-state 2D NMR of Ball-milled Plant Cell Wall Gels in DMSO-d6 , 2008, BioEnergy Research.

[19]  W. Boerjan,et al.  Lignin biosynthesis. , 2003, Annual review of plant biology.

[20]  R. Sederoff,et al.  Abnormal lignin in a loblolly pine mutant. , 1997, Science.

[21]  Marilyn F. Slininger,et al.  Lignin monomer composition affects Arabidopsis cell-wall degradability after liquid hot water pretreatment , 2010, Biotechnology for biofuels.

[22]  F. Meinzer,et al.  Transgenic poplars with reduced lignin show impaired xylem conductivity, growth efficiency and survival. , 2011, Plant, cell & environment.

[23]  C. Halpin Investigating and Manipulating Lignin Biosynthesis in the Postgenomic Era , 2004 .

[24]  D. E. Van Dyk,et al.  Initial evaluation of sugarcane as a production platform for p-hydroxybenzoic acid. , 2004, Plant biotechnology journal.

[25]  M. Gasson,et al.  4-hydroxycinnamoyl-CoA hydratase/lyase (HCHL)--An enzyme of phenylpropanoid chain cleavage from Pseudomonas. , 1999, Archives of biochemistry and biophysics.

[26]  J. Ralph,et al.  Coniferyl ferulate incorporation into lignin enhances the alkaline delignification and enzymatic degradation of cell walls. , 2008, Biomacromolecules.

[27]  Pollet,et al.  Structural alterations of lignins in transgenic poplars with depressed cinnamyl alcohol dehydrogenase or caffeic acid O-methyltransferase activity have an opposite impact on the efficiency of industrial kraft pulping , 1999, Plant physiology.

[28]  John Ralph,et al.  Identification of the structure and origin of a thioacidolysis marker compound for ferulic acid incorporation into angiosperm lignins (and an indicator for cinnamoyl CoA reductase deficiency). , 2007, The Plant journal : for cell and molecular biology.

[29]  Yi Li,et al.  The Activity of ArabidopsisGlycosyltransferases toward Salicylic Acid, 4-Hydroxybenzoic Acid, and Other Benzoates* , 2002, Journal of Biological Chemistry.

[30]  M. Pauly,et al.  ARABINAN DEFICIENT 1 Is a Putative Arabinosyltransferase Involved in Biosynthesis of Pectic Arabinan in Arabidopsis1[W] , 2005, Plant Physiology.

[31]  R. Dixon,et al.  Genetic manipulation of lignin reduces recalcitrance and improves ethanol production from switchgrass , 2011, Proceedings of the National Academy of Sciences.

[32]  T. Vogt Phenylpropanoid biosynthesis. , 2010, Molecular plant.

[33]  M. Parker,et al.  Rerouting the Plant Phenylpropanoid Pathway by Expression of a Novel Bacterial Enoyl-CoA Hydratase/Lyase Enzyme Function , 2001, The Plant Cell Online.

[34]  Xiaohong Yu,et al.  A hydroxycinnamoyltransferase responsible for synthesizing suberin aromatics in Arabidopsis , 2009, Proceedings of the National Academy of Sciences.

[35]  A. Boudet Evolution and Current Status of Research in Phenolic Compounds , 2008 .

[36]  R. Freeman,et al.  Compensated adiabatic inversion pulses: broadband INEPT and HSQC. , 2007, Journal of magnetic resonance.

[37]  David J. Miller,et al.  Enhancing alfalfa conversion efficiencies for sugar recovery and ethanol production by altering lignin composition. , 2011, Bioresource technology.

[38]  Jing-Ke Weng,et al.  The origin and evolution of lignin biosynthesis. , 2010, The New phytologist.

[39]  M. M. Bradford A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. , 1976, Analytical biochemistry.

[40]  H. Scheller,et al.  Rhamnogalacturonan I in Solanum tuberosum tubers contains complex arabinogalactan structures. , 2004, Phytochemistry.

[41]  M. Grant,et al.  Rapid linkage of indole carboxylic acid to the plant cell wall identified as a component of basal defence in Arabidopsis against hrp mutant bacteria. , 2010, Phytochemistry.

[42]  N. von Wirén,et al.  AtIREG2 Encodes a Tonoplast Transport Protein Involved in Iron-dependent Nickel Detoxification in Arabidopsis thaliana Roots* , 2006, Journal of Biological Chemistry.

[43]  P. Herdewijn,et al.  Phenolic Profiling of Caffeic Acid O-Methyltransferase-Deficient Poplar Reveals Novel Benzodioxane Oligolignols1 , 2004, Plant Physiology.

[44]  John Ralph,et al.  NMR analysis of lignins in CAD-deficient plants. Part 1. Incorporation of hydroxycinnamaldehydes and hydroxybenzaldehydes into lignins. , 2003, Organic & biomolecular chemistry.

[45]  G. L. Miller Use of Dinitrosalicylic Acid Reagent for Determination of Reducing Sugar , 1959 .

[46]  Staffan Persson,et al.  Large-Scale Co-Expression Approach to Dissect Secondary Cell Wall Formation Across Plant Species , 2011, Front. Plant Sci..

[47]  J. Keasling,et al.  Production of tranilast [N-(3′,4′-dimethoxycinnamoyl)-anthranilic acid] and its analogs in yeast Saccharomyces cerevisiae , 2011, Applied Microbiology and Biotechnology.

[48]  Amie D. Sluiter,et al.  Determination of Structural Carbohydrates and Lignin in Biomass , 2004 .

[49]  Wout Boerjan,et al.  Lignin: genetic engineering and impact on pulping. , 2003, Critical reviews in biochemistry and molecular biology.

[50]  F. Pomar,et al.  Digestibility of silages in relation to their hydroxycinnamic acid content and lignin composition. , 2010, Journal of the science of food and agriculture.

[51]  C. W. Dence,et al.  The Determination of Lignin , 1992 .

[52]  B. Sundberg,et al.  Downregulation of Cinnamoyl-Coenzyme A Reductase in Poplar: Multiple-Level Phenotyping Reveals Effects on Cell Wall Polymer Metabolism and Structure[W] , 2007, The Plant Cell Online.

[53]  K. Waldron,et al.  4-Hydroxycinnamoyl-CoA hydratase/lyase, an enzyme of phenylpropanoid cleavage from Pseudomonas, causes formation of C6-C1 acid and alcohol glucose conjugates when expressed in hairy roots of Datura stramonium L. , 2002, Planta.

[54]  R. Dixon,et al.  Salicylic acid mediates the reduced growth of lignin down-regulated plants , 2011, Proceedings of the National Academy of Sciences.

[55]  Blake A. Simmons,et al.  The effect of ionic liquid cation and anion combinations on the macromolecular structure of lignins , 2011 .

[56]  R. Dixon,et al.  Selective lignin downregulation leads to constitutive defense response expression in alfalfa (Medicago sativa L.). , 2011, The New phytologist.

[57]  J. Ralph,et al.  NMR of lignins , 2010 .

[58]  M. Parker,et al.  Metabolic diversion of the phenylpropanoid pathway causes cell wall and morphological changes in transgenic tobacco stems , 2007, Planta.

[59]  J. Keasling Manufacturing Molecules Through Metabolic Engineering , 2010, Science.

[60]  M. Djordjevic,et al.  Flavonoids: new roles for old molecules. , 2010, Journal of integrative plant biology.

[61]  T. Umezawa The cinnamate/monolignol pathway , 2010, Phytochemistry Reviews.

[62]  M. Parker,et al.  Expression of a bacterial, phenylpropanoid-metabolizing enzyme in tobacco reveals essential roles of phenolic precursors in normal leaf development and growth. , 2012, Physiologia plantarum.