How to generate reliable and predictive CoMFA models.
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Lei Zhang | Lupei Du | Hao Fang | Minyong Li | Wenfang Xu | Keng-Chang Tsai | K. Tsai | Minyong Li | H. Fang | Lei Zhang | Wenfang Xu | Lupei Du
[1] Minyong Li,et al. A comparison of different electrostatic potentials on prediction accuracy in CoMFA and CoMSIA studies. , 2010, European journal of medicinal chemistry.
[2] R. Giridhar,et al. Understanding the antitumor activity of novel tricyclicpiperazinyl derivatives as farnesyltransferase inhibitors using CoMFA and CoMSIA. , 2006, European journal of medicinal chemistry.
[3] Hai-Feng Chen,et al. Computational study of histamine H3-receptor antagonist with support vector machines and three dimension quantitative structure activity relationship methods. , 2008, Analytica chimica acta.
[4] Dhilon S. Patel,et al. 3D-QSAR and molecular docking studies on pyrazolopyrimidine derivatives as glycogen synthase kinase-3beta inhibitors. , 2007, Journal of molecular graphics & modelling.
[5] I. Pajeva,et al. Molecular modeling of phenothiazines and related drugs as multidrug resistance modifiers: a comparative molecular field analysis study. , 1998, Journal of medicinal chemistry.
[6] H. Kubinyi. QSAR : Hansch analysis and related approaches , 1993 .
[7] Asit K Chakraborti,et al. 3D-QSAR studies of indole derivatives as phosphodiesterase IV inhibitors. , 2003, European journal of medicinal chemistry.
[8] Peter Gedeck,et al. Use of the R-group descriptor for alignment-free QSAR , 2005 .
[9] Tanaji T. Talele,et al. Structure-based CoMFA and CoMSIA study of indolinone inhibitors of PDK1 , 2009, J. Comput. Aided Mol. Des..
[10] L. Meijer,et al. Evaluation and comparison of 3D-QSAR CoMSIA models for CDK1, CDK5, and GSK-3 inhibition by paullones. , 2004, Journal of medicinal chemistry.
[11] K Tuppurainen,et al. Frontier orbital energies, hydrophobicity and steric factors as physical QSAR descriptors of molecular mutagenicity. A review with a case study: MX compounds. , 1999, Chemosphere.
[12] S. Wold,et al. Comparative molecular field analysis , 1991 .
[13] R. Bursi,et al. Structure–activity relationship study of human liver microsomes-catalyzed hydrolysis rate of ester prodrugs of MENT by comparative molecular field analysis (CoMFA) , 2003, Steroids.
[14] Karl Pearson F.R.S.. LIII. On lines and planes of closest fit to systems of points in space , 1901 .
[15] Bruce L. Bush,et al. Sample-distance partial least squares: PLS optimized for many variables, with application to CoMFA , 1993, J. Comput. Aided Mol. Des..
[16] H. Kubinyi. QSAR and 3D QSAR in drug design Part 1: methodology , 1997 .
[17] Jianfeng Pei,et al. 3D-QSAR and Receptor Modeling of Tyrosine Kinase Inhibitors with Flexible Atom Receptor Model (FLARM) , 2003, J. Chem. Inf. Comput. Sci..
[18] Pramod C. Nair,et al. CoMFA based de novo design of pyridazine analogs as PTP1B inhibitors. , 2007, Journal of molecular graphics & modelling.
[19] Huanxiang Liu,et al. Molecular modeling studies of vascular endothelial growth factor receptor tyrosine kinase inhibitors using QSAR and docking. , 2009, Journal of molecular graphics & modelling.
[20] David E Reichert,et al. Use of binding energy in comparative molecular field analysis of isoform selective estrogen receptor ligands. , 2004, Journal of molecular graphics & modelling.
[21] O. Vajragupta,et al. Comparative quantitative structure-activity study of radical scavengers. , 2000, Bioorganic & medicinal chemistry.
[22] Thy-Hou Lin,et al. A Ligand-Based Molecular Modeling Study on Some Matrix Metalloproteinase-1 Inhibitors Using Several 3D QSAR Techniques , 2004, J. Chem. Inf. Model..
[23] Wesley Schaal,et al. Improved CoMFA Modeling by Optimization of Settings , 2006, J. Chem. Inf. Model..
[25] Y. Martin,et al. Direct prediction of dissociation constants (pKa's) of clonidine-like imidazolines, 2-substituted imidazoles, and 1-methyl-2-substituted-imidazoles from 3D structures using a comparative molecular field analysis (CoMFA) approach. , 1991, Journal of medicinal chemistry.
[26] H. Kubinyi. QSAR and 3D QSAR in drug design Part 2: applications and problems , 1997 .
[27] R. Cramer,et al. Comparative molecular field analysis (CoMFA). 1. Effect of shape on binding of steroids to carrier proteins. , 1988, Journal of the American Chemical Society.
[28] J Pei,et al. PARM: a practical utility for drug design. , 2001, Journal of molecular graphics & modelling.
[29] Ding-Yah Yang,et al. 3D-QSAR studies on 4-hydroxyphenylpyruvate dioxygenase inhibitors by comparative molecular field analysis (CoMFA). , 2002, Bioorganic & medicinal chemistry letters.
[30] Lowell H. Hall,et al. E-State Modeling of Corticosteroids Binding AffinityValidation of Model for Small Data Set , 2001, J. Chem. Inf. Comput. Sci..
[31] R. Cramer,et al. Topomer CoMFA: a design methodology for rapid lead optimization. , 2003, Journal of medicinal chemistry.
[32] Han van de Waterbeemd,et al. Chemometric methods in molecular design , 1995 .
[33] Michael R. Greenberg,et al. Chapter 1 – Theory, Methods, and Applications , 1978 .
[34] G Klebe,et al. On the prediction of binding properties of drug molecules by comparative molecular field analysis. , 1993, Journal of medicinal chemistry.
[35] Quantitative Structure‐Retention Relationship of Nucleic‐Acid Bases Revisited. CoMFA on Purine RPLC Retention , 2005 .
[36] W. Sippl,et al. Receptor-based 3D-QSAR studies of checkpoint Wee1 kinase inhibitors. , 2009, European journal of medicinal chemistry.
[37] P. Bharatam,et al. 3D-QSAR studies of substituted 1-(3, 3-diphenylpropyl)-piperidinyl amides and ureas as CCR5 receptor antagonists , 2007, Journal of molecular modeling.
[38] Patchreenart Saparpakorn,et al. Particular interaction between pyrimethamine derivatives and quadruple mutant type dihydrofolate reductase of Plasmodium falciparum: CoMFA and quantum chemical calculations studies. , 2009, Journal of enzyme inhibition and medicinal chemistry.
[39] P. Bharatam,et al. 3D-QSAR analysis of cycloguanil derivatives as inhibitors of A16V + S108T mutant Plasmodium falciparum dihydrofolate reductase enzyme. , 2009, Journal of molecular graphics & modelling.
[40] D. Ferguson,et al. QSAR and CoMFA: a perspective on the practical application to drug discovery. , 2000, Drug Design and Discovery.
[41] Toshio Fujita,et al. A Novel Three‐Dimensional QSAR Procedure: Voronoi Field Analysis , 1998 .
[42] A. Tropsha,et al. Beware of q2! , 2002, Journal of molecular graphics & modelling.
[43] R. Zauhar,et al. Computational studies on HIV-1 protease inhibitors: influence of calculated inhibitor-enzyme binding affinities on the statistical quality of 3D-QSAR CoMFA models. , 2000, Journal of medicinal chemistry.
[44] R. Mckinnon,et al. Effect of steric molecular field settings on CoMFA predictivity , 2008, Journal of molecular modeling.
[45] Lowell H. Hall,et al. E-State Modeling of Corticosteroids Binding Affinity Validation of Model for Small Data Set. , 2001 .
[46] Markus A Lill,et al. Multi-dimensional QSAR in drug discovery. , 2007, Drug discovery today.
[47] Alexander Tropsha,et al. The effect of region size on CoMFA analyses , 1999 .
[48] Shuyan Li,et al. Comparative molecular field analysis (CoMFA) and comparative molecular similarity indices analysis (CoMSIA) of thiazolone derivatives as hepatitis C virus NS5B polymerase allosteric inhibitors , 2008, J. Comput. Aided Mol. Des..
[49] Euzébio G. Barbosa,et al. LQTA-QSAR: A New 4D-QSAR Methodology , 2009, J. Chem. Inf. Model..
[50] W. Schmidt,et al. Steric and electrostatic effects in dye-cellulose interactions by the MTD and CoMFA approaches , 2002, SAR and QSAR in environmental research.
[51] Guang-Fu Yang,et al. Development of quantitative structure-activity relationships and its application in rational drug design. , 2006, Current pharmaceutical design.
[52] Yong-Jun Jiang,et al. 3D-QSAR studies of HDACs inhibitors using pharmacophore-based alignment. , 2009, European journal of medicinal chemistry.
[53] Balázs Jójárt,et al. Receptor-based QSAR studies of non-peptide human oxytocin receptor antagonists. , 2007, Journal of molecular graphics & modelling.
[54] A Palomer,et al. Derivation of pharmacophore and CoMFA models for leukotriene D(4) receptor antagonists of the quinolinyl(bridged)aryl series. , 2000, Journal of medicinal chemistry.
[55] Robert E. Hormann,et al. An extensive ecdysteroid CoMFA , 1999, J. Comput. Aided Mol. Des..
[56] Z. Xi,et al. Study on structure-activity relationship of mutation-dependent herbicide resistance acetohydroxyacid synthase through 3D-QSAR and mutation , 2007 .
[57] Tommi H. Nyrönen,et al. Comparing the Quality and Predictiveness between 3D QSAR Models Obtained from Manual and Automated Alignment , 2004, J. Chem. Inf. Model..
[58] G. Zeng,et al. 3D-QSAR study of sulfonamide inhibitors of human carbonic anhydrase II. , 2007, European journal of medicinal chemistry.
[59] Klaus R. Liedl,et al. Improving the Predictive Quality of CoMFA Models , 1998 .
[60] H. Kubinyi,et al. 3D QSAR in drug design. , 2002 .
[61] Michel Petitjean,et al. Insight into the Bioactivity and Metabolism of Human Glucagon Receptor Antagonists from 3D‐QSAR Analyses , 2004 .
[62] Jiaju Zhou,et al. Pseudoreceptor Models and 3D-QSAR for Imidazobenzodiazepines at GABAA/BzR Subtypes alphaxbeta3gamma2 [x = 1-3, 5, and 6] via Flexible Atom Receptor Model , 2004, J. Chem. Inf. Model..
[63] William J. Welsh,et al. Three-Dimensional Quantitative Structure-Property Relationship (3D-QSPR) Models for Prediction of Thermodynamic Properties of Polychlorinated Biphenyls (PCBs): Enthalpy of Vaporization , 2002, J. Chem. Inf. Comput. Sci..
[64] N. Tawari,et al. 3‐D‐QSAR Analysis of 2‐(Oxalylamino) benzoic acid Class of Protein Tyrosine Phosphatase 1B Inhibitors by CoMFA and Cerius2.GA , 2007 .
[65] H Hanhijärvi,et al. Comparative molecular field analysis of some clodronic acid esters. , 1991, Journal of medicinal chemistry.
[66] M. Degani,et al. Pharmacophore Refinement and 3D-QSAR Studies of Histamine H3 Antagonists , 2007 .
[67] R. Bursi,et al. A three-dimensional quantitative structure-activity relationship study of heparin-binding epidermal growth factor shedding inhibitors using comparative molecular field analysis. , 2002, Journal of medicinal chemistry.
[68] Lisa Harris,et al. Partial Charge Calculation Method Affects CoMFA QSAR Prediction Accuracy , 2009, J. Chem. Inf. Model..
[69] Peter D. J. Grootenhuis,et al. Comparative molecular field analysis and energy interaction studies of thrombin-inhibitor complexes , 1999, J. Comput. Aided Mol. Des..
[70] William J. Welsh,et al. Three-Dimensional Quantitative Structure-Property Relationship (3D-QSPR) Models for Prediction of Thermodynamic Properties of Polychlorinated Biphenyls (PCBs): Enthalpy of Sublimation , 2002, J. Chem. Inf. Comput. Sci..
[71] Yang Xu,et al. 3D‐QSAR Studies on a Class of IKK‐2 Inhibitors with GALAHAD Used to Develop Molecular Alignment Models , 2008 .
[72] Alexander Golbraikh,et al. Rational selection of training and test sets for the development of validated QSAR models , 2003, J. Comput. Aided Mol. Des..
[73] Minghua Qiu,et al. 3D-QSAR and docking studies of aminopyridine carboxamide inhibitors of c-Jun N-terminal kinase-1. , 2008, European journal of medicinal chemistry.
[74] S. Sinning,et al. QSAR studies and pharmacophore identification for arylsubstituted cycloalkenecarboxylic acid methyl esters with affinity for the human dopamine transporter. , 2007, Bioorganic & medicinal chemistry.
[75] H. Kubinyi. Comparative Molecular Field Analysis (CoMFA) , 2002 .
[76] Yoshiaki Nakagawa,et al. Classical and three-dimensional QSAR for the inhibition of [3H]ponasterone A binding by diacylhydrazine-type ecdysone agonists to insect Sf-9 cells. , 2005, Bioorganic & medicinal chemistry.
[77] Robert D. Clark,et al. Boosted leave-many-out cross-validation: the effect of training and test set diversity on PLS statistics , 2003, J. Comput. Aided Mol. Des..
[78] David A. Demeter,et al. The Local Minima Method (LMM) of Pharmacophore Determination: A Protocol for Predicting the Bioactive Conformation of Small, Conformationally Flexible Molecules , 1998, J. Chem. Inf. Comput. Sci..
[79] Jonathan D. Hirst,et al. On the Stability of CoMFA Models , 2004, J. Chem. Inf. Model..
[80] Hao Chen,et al. Improving the Quality of 3D-QSAR by Using Flexible-Ligand Receptor Models , 2005, J. Chem. Inf. Model..
[81] M. Jung,et al. CoMFA of artemisinin derivatives: effect of location and size of lattice. , 2001, Bioorganic & medicinal chemistry letters.
[82] E. Coutinho,et al. A CoMFA study of COX-2 inhibitors with receptor based alignment. , 2004, Journal of molecular graphics & modelling.
[83] Deborah A. Loughney,et al. A comparison of progestin and androgen receptor binding using the CoMFA technique , 1992, J. Comput. Aided Mol. Des..
[84] J. Sufrin,et al. Steric mapping of the L-methionine binding site of ATP:L-methionine S-adenosyltransferase. , 1981, Molecular pharmacology.
[85] A. Hopfinger,et al. Construction of 3D-QSAR Models Using the 4D-QSAR Analysis Formalism , 1997 .
[86] I. Park,et al. Molecular modeling of 3-arylisoquinoline antitumor agents active against A-549. A comparative molecular field analysis study. , 2002, Bioorganic & medicinal chemistry.
[87] Jaroslaw Polanski,et al. Probability issues in molecular design: predictive and modeling ability in 3D-QSAR schemes. , 2004, Combinatorial chemistry & high throughput screening.
[88] Han Van De Waterbeemd. Advanced Computer-Assisted Techniques in Drug Discover , 1994 .