A simpler way to predict flowering and full bloom dates of cherry blossoms by self-organizing maps

Abstract Knowledge of flowering and leaf flush phenology is important for a deep understanding of the responses of ecosystem functions, ecosystem services, and biodiversity to climate change. Process-based phenology models, which account statistically for chilling accumulation for endodormancy release and thermal accumulation after endodormancy release, can predict flowering and leaf flush dates, but they are difficult to develop for poorly studied species. A simpler approach is needed. We propose a model of the blooming phenology of Yoshino cherry trees (Cerasus ×yedoensis) based on bidirectional self-organizing maps (SOM). SOM, a data mining approach, is a tool for categorizing patterns in n-dimensional observation data by forming a two-dimensional lattice. The bi-directional SOM was applied to the data of daily mean temperature, using flowering (or full blooming) dates as teacher signals. We inputted daily mean air temperatures during the thermal accumulation period (mainly from February to just before flowering) into multiple input vectors and obtained flowering or full bloom dates into an output vector. The mean absolute errors between predicted and observed dates at 42 locations in Japan ranged from 2.8 to about 4.5 days for flowering and full bloom. The bidirectional SOM approach had a slightly higher error than the process-based phenology model approach, but it has an advantage in predicting flowering and leaf flush dates of poorly studied species under future warming conditions.

[1]  Teuvo Kohonen,et al.  Self-organized formation of topologically correct feature maps , 2004, Biological Cybernetics.

[2]  T. Sparks,et al.  Local-scale adaptation to climate change: the village flower festival , 2014 .

[3]  Josep Peñuelas,et al.  Phenology Feedbacks on Climate Change , 2009, Science.

[4]  Teuvo Kohonen,et al.  The self-organizing map , 1990 .

[5]  Anne Tolvanen,et al.  Pan European Phenological database (PEP725): a single point of access for European data , 2018, International Journal of Biometeorology.

[6]  Gaku Kudo,et al.  Vulnerability of phenological synchrony between plants and pollinators in an alpine ecosystem , 2014, Ecological Research.

[7]  J. Peñuelas,et al.  European phenological response to climate change matches the warming pattern , 2006 .

[8]  Ivan A. Janssens,et al.  The Impact of Winter and Spring Temperatures on Temperate Tree Budburst Dates: Results from an Experimental Climate Manipulation , 2012, PloS one.

[9]  Feng Gao,et al.  Evaluation of the suitability of Landsat, MERIS, and MODIS for identifying spatial distribution patterns of total suspended matter from a self-organizing map (SOM) perspective , 2019, CATENA.

[10]  Quansheng Ge,et al.  Geographical pattern in first bloom variability and its relation to temperature sensitivity in the USA and China , 2015, International Journal of Biometeorology.

[11]  Marie R Keatley,et al.  Using Self-Organising Maps (SOMs) to assess synchronies: an application to historical eucalypt flowering records , 2011, International journal of biometeorology.

[12]  Hans W. Linderholm,et al.  Growing season changes in the last century , 2006 .

[13]  Dae-Jun Kim,et al.  Using daily temperature to predict phenology trends in spring flowers , 2015, Asia-Pacific Journal of Atmospheric Sciences.

[14]  Toshihiko Sugiura,et al.  A universal model for predicting the full bloom date of Japanese flowering cherry , 2010 .

[15]  Mikiko Kainuma,et al.  Potential Effects on the Phenological Observation of Plants by Global Warming in Japan , 1993 .

[16]  R. Primack,et al.  Culture and climate change: Japanese cherry blossom festivals and stakeholders’ knowledge and attitudes about global climate change , 2011 .

[17]  Quansheng Ge,et al.  Impact of Climate Variability on Flowering Phenology and Its Implications for the Schedule of Blossom Festivals , 2017 .

[18]  Eike Luedeling,et al.  Identification of chilling and heat requirements of cherry trees—a statistical approach , 2012, International Journal of Biometeorology.

[19]  Quansheng Ge,et al.  Parameterization of temperature sensitivity of spring phenology and its application in explaining diverse phenological responses to temperature change , 2015, Scientific Reports.

[20]  Sang Don Lee,et al.  Impact of global warming on a group of related species and their hybrids: cherry tree (Rosaceae) flowering at Mt. Takao, Japan. , 2007, American journal of botany.

[21]  Richard L. Snyder,et al.  Chilling and forcing model to predict bud-burst of crop and forest species , 2004 .

[22]  José Antonio Campoy,et al.  Yield potential definition of the chilling requirement reveals likely underestimation of the risk of climate change on winter chill accumulation , 2018, International Journal of Biometeorology.

[23]  D. Basler Evaluating phenological models for the prediction of leaf-out dates in six temperate tree species across central Europe , 2016 .

[24]  Guillaume Charrier,et al.  Can phenological models predict tree phenology accurately in the future? The unrevealed hurdle of endodormancy break , 2016, Global change biology.

[25]  Y. Aono,et al.  A Generalized Model to Estimate Flowering for Cherry Tree (Prunus yedoensis) Considering both Processes of Endodormancy Completion and Development , 2003 .

[26]  T. Inoue,et al.  Influence of temperature change on plant tourism in Japan: a case study of the flowering of Lycoris radiata (red spider lily). , 2015 .

[27]  Christian Körner,et al.  Phenology Under Global Warming , 2010, Science.

[28]  T. Kohonen Self-organized formation of topographically correct feature maps , 1982 .

[29]  J. Schaber,et al.  Responses of spring phenology to climate change , 2004 .

[30]  知浩 丸岡,et al.  わが国のサクラ(ソメイヨシノ)の開花に対する地球温暖化の影響 , 2009 .

[31]  Chang-Hoi Ho,et al.  Impact of urban warming on earlier spring flowering in Korea , 2011 .

[32]  Constance A. Harrington,et al.  Tradeoffs between chilling and forcing in satisfying dormancy requirements for Pacific Northwest tree species , 2015, Front. Plant Sci..

[33]  Daniela Giovannini,et al.  A collection of European sweet cherry phenology data for assessing climate change , 2016, Scientific Data.

[34]  O. Sonnentag,et al.  Climate change, phenology, and phenological control of vegetation feedbacks to the climate system , 2013 .

[35]  A. Donnelly,et al.  The rise of phenology with climate change: an evaluation of IJB publications , 2017, International Journal of Biometeorology.

[36]  María Amparo Gilabert,et al.  Identification of Ecosystem Functional Types from Coarse Resolution Imagery Using a Self-Organizing Map Approach: A Case Study for Spain , 2014, Remote. Sens..

[37]  Kazuhiko Kobayashi,et al.  Apple (Malus pumila var. domestica) phenology is advancing due to rising air temperature in northern Japan , 2010 .

[38]  Soo-Hyung Kim,et al.  Predicting the Timing of Cherry Blossoms in Washington, DC and Mid-Atlantic States in Response to Climate Change , 2011, PloS one.