Atomic force microscopy: High resolution dynamic imaging of cellular and molecular structure in health and disease

The atomic force microscope (AFM), invented in 1986, and a member of the scanning probe family of microscopes, offers the unprecedented ability to image biological samples unfixed and in a hydrated environment at high resolution. This opens the possibility to investigate biological mechanisms temporally in a heretofore unattainable resolution. We have used AFM to investigate: (1) fundamental issues in cell biology (secretion) and, (2) the pathological basis of a human thrombotic disease, the antiphospholipid syndrome (APS). These studies have incorporated the imaging of live cells at nanometer resolution, leading to discovery of the “porosome,” the universal secretory portal in cells, and a molecular understanding of membrane fusion from imaging the interaction and assembly of proteins between opposing lipid membranes. Similarly, the development of an in vitro simulacrum for investigating the molecular interactions between proteins and lipids has helped define an etiological explanation for APS. The prime importance of AFM in the success of these investigations will be presented in this manuscript, as well as a discussion of the limitations of this technique for the study of biomedical samples. J. Cell. Physiol. 228: 1949–1955, 2013. © 2013 Wiley Periodicals, Inc.

[1]  K. Nagayama,et al.  Direct observation of biological molecules in liquid by environmental phase-plate transmission electron microscopy. , 2012, Micron.

[2]  B. Jena,et al.  Structure, isolation, composition and reconstitution of the neuronal fusion pore , 2004, Cell biology international.

[3]  B. Jena,et al.  EM 3D contour maps provide protein assembly at the nanoscale within the neuronal porosome complex , 2008, Journal of microscopy.

[4]  B. Jena,et al.  Membrane fusion: what may transpire at the atomic level , 2002 .

[5]  M. Petri Thrombosis and systemic lupus erythematosus: the Hopkins Lupus Cohort perspective. , 1996, Scandinavian journal of rheumatology.

[6]  F E Bloom,et al.  The identification of a novel synaptosomal-associated protein, SNAP-25, differentially expressed by neuronal subpopulations , 1989, The Journal of cell biology.

[7]  Gerber,et al.  Atomic Force Microscope , 2020, Definitions.

[8]  B. Jena,et al.  Membrane-directed molecular assembly of the neuronal SNARE complex , 2011, Journal of cellular and molecular medicine.

[9]  M. Zhvania,et al.  Hypokinetic stress and neuronal porosome complex in the rat brain: the electron microscopic study. , 2012, Micron.

[10]  Joan M. Lau,et al.  Atomic force microscopy imaging of living cells: a preliminary study of the disruptive effect of the cantilever tip on cell morphology. , 2000, Ultramicroscopy.

[11]  Optimized sample preparation for high‐resolution AFM characterization of fixed human cells , 2010, Journal of microscopy.

[12]  K. Aifantis,et al.  Capturing the elasticity and morphology of live fibroblast cell cultures during degradation with atomic force microscopy , 2013, Journal of microscopy.

[13]  Xiaowei Liu,et al.  Hydroxychloroquine reverses thrombogenic properties of antiphospholipid antibodies in mice. , 1997, Circulation.

[14]  B. Jena,et al.  Structure and dynamics of the fusion pores in live GH-secreting cells revealed using atomic force microscopy. , 2002, Endocrinology.

[15]  N. Rothfield Efficacy of antimalarials in systemic lupus erythematosus. , 1988, The American journal of medicine.

[16]  Waslat W. Elshennawy POROSOME IN MAMMALIAN PANCREATIC ACINAR CELL , 2011 .

[17]  R. Scheller,et al.  VAMP-1: a synaptic vesicle-associated integral membrane protein. , 1988, Proceedings of the National Academy of Sciences of the United States of America.

[18]  3D organization and function of the cell: Golgi budding and vesicle biogenesis to docking at the porosome complex , 2012, Histochemistry and Cell Biology.

[19]  C. Gerber,et al.  Surface Studies by Scanning Tunneling Microscopy , 1982 .

[20]  Brisson,et al.  Growth of Protein 2-D Crystals on Supported Planar Lipid Bilayers Imaged in Situ by AFM. , 1998, Journal of structural biology.

[21]  J. Rand,et al.  Insights into the pathophysiology of the antiphospholipid syndrome provided by atomic force microscopy. , 2012, Micron.

[22]  B. Jena,et al.  Membrane lipids influence protein complex assembly-disassembly. , 2010, Journal of the American Chemical Society.

[23]  Identification of new structural elements within 'porosomes' of the exocrine pancreas: a detailed study using high-resolution electron microscopy. , 2013, Micron.

[24]  X. Zhuang,et al.  Fast three-dimensional super-resolution imaging of live cells , 2011, Nature Methods.

[25]  C. Wright,et al.  Atomic force microscopy comes of age , 2010, Biology of the cell.

[26]  Neuronal porosome in the rat and cat brain , 2012, Cell and Tissue Biology.

[27]  W. Montigny,et al.  Atomic Force Microscopy in the Study of Macromolecular Interactions in Hemostasis and Thrombosis: Utility for Investigation of the Antiphospholipid Syndrome , 2005 .

[28]  P. Selvin Lighting up single ion channels. , 2003, Biophysical journal.

[29]  A. Guha,et al.  Reduction of annexin-V (placental anticoagulant protein-I) on placental villi of women with antiphospholipid antibodies and recurrent spontaneous abortion. , 1994, American journal of obstetrics and gynecology.

[30]  B. Jena,et al.  Size of supramolecular SNARE complex: membrane-directed self-assembly. , 2005, Journal of the American Chemical Society.

[31]  Mica Ohara-Imaizumi,et al.  Secretory granules are recaptured largely intact after stimulated exocytosis in cultured endocrine cells , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[32]  Comparative study of the conditions required to image live human epithelial and fibroblast cells using atomic force microscopy , 2006, Microscopy research and technique.

[33]  B. Jena,et al.  Calcium drives fusion of SNARE‐apposed bilayers , 2004, Cell biology international.

[34]  Yves F Dufrêne,et al.  Atomic force microscopy – looking at mechanosensors on the cell surface , 2012, Journal of Cell Science.

[35]  A. Engel,et al.  Voltage and pH-induced channel closure of porin OmpF visualized by atomic force microscopy. , 1999, Journal of molecular biology.

[36]  Chenglong Xia,et al.  Super-resolution fluorescence imaging of organelles in live cells with photoswitchable membrane probes , 2012, Proceedings of the National Academy of Sciences.

[37]  Benjamin S. Glick,et al.  Role of an N-ethylmaleimide-sensitive transport component in promoting fusion of transport vesicles with cisternae of the Golgi stack , 1988, Cell.

[38]  Douglas J Taatjes,et al.  STRUCTURE AND DYNAMICS OF THE FUSION PORE IN LIVE CELLS , 2002, Cell biology international.

[39]  B. Jena,et al.  Energy-dependent disassembly of self-assembled SNARE complex: observation at nanometer resolution using atomic force microscopy. , 2006, Journal of the American Chemical Society.

[40]  Cees Dekker,et al.  High-Speed AFM Reveals the Dynamics of Single Biomolecules at the Nanometer Scale , 2011, Cell.

[41]  Mark Bates,et al.  Evaluation of fluorophores for optimal performance in localization-based super-resolution imaging , 2011, Nature Methods.

[42]  B. Jena,et al.  Aquaporin-assisted and ER-mediated mitochondrial fission: a hypothesis. , 2013, Micron.

[43]  J. Rand,et al.  Resistance to annexin A5 anticoagulant activity: a thrombogenic mechanism for the antiphospholipid syndrome , 2008, Lupus.

[44]  W. Cho,et al.  Identification of the porosome complex in the hair cell , 2011, Cell biology international reports.

[45]  R. Tsien,et al.  Single synaptic vesicles fusing transiently and successively without loss of identity , 2003, Nature.

[46]  Mark Bates,et al.  Super-resolution fluorescence microscopy. , 2009, Annual review of biochemistry.

[47]  B. Persson The atomic force microscope: Can it be used to study biological molecules? , 1987 .

[48]  James A Galbraith,et al.  Super-resolution microscopy at a glance , 2011, Journal of Cell Science.

[49]  H. Leonhardt,et al.  A guide to super-resolution fluorescence microscopy , 2010, The Journal of cell biology.

[50]  J. Rand Molecular Pathogenesis of the Antiphospholipid Syndrome , 2002, Circulation research.

[51]  R. Scheller,et al.  Syntaxin: a synaptic protein implicated in docking of synaptic vesicles at presynaptic active zones. , 1992, Science.

[52]  C. Yip,et al.  Coupling evanescent‐wave fluorescence imaging and spectroscopy with scanning probe microscopy: challenges and insights from TIRF–AFM , 2006 .

[53]  E. Betzig,et al.  Live-cell photoactivated localization microscopy of nanoscale adhesion dynamics , 2008, Nature Methods.

[54]  B. Jena,et al.  Reconstituted fusion pore. , 2003, Biophysical journal.

[55]  B. Jena,et al.  N-ethylmaleimide-sensitive factor is a right-handed molecular motor , 2007 .

[56]  Douglas J Taatjes,et al.  Viewing dynamic interactions of proteins and a model lipid membrane with atomic force microscopy. , 2013, Methods in molecular biology.

[57]  J. Rand,et al.  The annexin A5-mediated pathogenic mechanism in the antiphospholipid syndrome: role in pregnancy losses and thrombosis , 2010, Lupus.

[58]  J. Rand,et al.  Pregnancy loss in the antiphospholipid-antibody syndrome--a possible thrombogenic mechanism. , 1997, The New England journal of medicine.

[59]  Pojen P. Chen,et al.  Hydroxychloroquine directly reduces the binding of antiphospholipid antibody-beta2-glycoprotein I complexes to phospholipid bilayers. , 2008, Blood.

[60]  Aufried T. M. Lenferink,et al.  Combined AFM and confocal fluorescence microscope for applications in bio‐nanotechnology , 2005, Journal of microscopy.

[61]  B. Jena,et al.  Neuronal porosome proteome: Molecular dynamics and architecture. , 2012, Journal of proteomics.

[62]  Paul Greengard,et al.  Three-Dimensional Architecture of Presynaptic Terminal Cytomatrix , 2007, The Journal of Neuroscience.

[63]  B. Jena,et al.  Structure of membrane-associated neuronal SNARE complex: implication in neurotransmitter release , 2009, Journal of cellular and molecular medicine.

[64]  P. D. de Groot,et al.  The significance of autoantibodies against β2-glycoprotein I. , 2012, Blood.

[65]  B. Jena,et al.  SNAREs in opposing bilayers interact in a circular array to form conducting pores. , 2002, Biophysical journal.

[66]  D. Taatjes,et al.  Quality assessment of atomic force microscopy probes by scanning electron microscopy: Correlation of tip structure with rendered images , 1999, Microscopy research and technique.

[67]  Pojen P. Chen,et al.  Human monoclonal antiphospholipid antibodies disrupt the annexin A5 anticoagulant crystal shield on phospholipid bilayers: evidence from atomic force microscopy and functional assay. , 2003, The American journal of pathology.

[68]  Sang-Joon Cho,et al.  Structure and composition of the fusion pore. , 2003, Biophysical journal.

[69]  Applications of atomic force microscopy in biophysical chemistry of cells. , 2010, The journal of physical chemistry. B.

[70]  B. Sobel,et al.  Imaging aspects of cardiovascular disease at the cell and molecular level , 2008, Histochemistry and Cell Biology.

[71]  K. Fogarty,et al.  Zymogen granule exocytosis is characterized by long fusion pore openings and preservation of vesicle lipid identity. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[72]  B. Jena,et al.  Surface dynamics in living acinar cells imaged by atomic force microscopy: identification of plasma membrane structures involved in exocytosis. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[73]  Pojen P. Chen,et al.  Hydroxychloroquine protects the annexin A5 anticoagulant shield from disruption by antiphospholipid antibodies: evidence for a novel effect for an old antimalarial drug. , 2010, Blood.

[74]  S. Weiss,et al.  Combining atomic force and fluorescence microscopy for analysis of quantum‐dot labeled protein–DNA complexes , 2009, Journal of molecular recognition : JMR.