Predicting biological impairment from habitat assessments

The goal of biological monitoring programs is to determine impairment classification and identify local stressors. Biological monitoring performs well at detecting impairment but when used alone falls short of determining the cause of the impairment. Following detection a more thorough survey is often conducted using extensive biological, chemical, and physical analysis coupled with exhaustive statistical treatments. These methods can be prohibitive for small programs that are limited by time and budget. The objective of this study was to develop a simple and useful model to predict the probability of biological impairment based on routinely collected habitat assessments. Biological communities were assessed with the Index of Biotic Integrity (IBI), and habitat was assessed with the Qualitative Habitat Evaluation Index. Two models were constructed from a validation dataset. The first predicted a binary outcome of impaired (IBI < 35) or non-impaired (IBI ≥ 35) and the second predicted a categorical gradient of impairment. Categories include very poor, poor, fair, good, and excellent. The models were then validated with an independently collected dataset. Both models successfully predicted biological integrity of the validation dataset with an accuracy of 0.84 (binary) and 0.75 (categorical). Based on the binary outcome model, 22 sites were observed to be impaired while the model predicted them to not be impaired. The categorical model misclassified 47 samples while only seven of those were misclassified by two or more categories. The impairment source was subsequently identified by known stressors. The models developed here can be easily applied to other datasets from the Eastern Corn Belt Plain to aid in stressor identification by predicting the probability of observing an impaired fish community based on habitat. Predicted probabilities from the models can also be used to support conclusions that have already been determined.

[1]  A multi-level concept for fish-based, river-type-specific assessment of ecological integrity , 2000 .

[2]  T. Oberdorff,et al.  Modification of an index of biotic integrity based on fish assemblages to characterize rivers of the Seine Basin, France , 2004, Hydrobiologia.

[3]  M. Pyron,et al.  Habitat Influence on Fish Community Assemblage in an Agricultural Landscape in Four East Central Indiana Streams , 2004 .

[4]  James R. Karr,et al.  A Benthic Index of Biotic Integrity (B-IBI) for Rivers of the Tennessee Valley , 1994 .

[5]  D. Carlisle,et al.  Biological assessments of Appalachian streams based on predictive models for fish, macroinvertebrate, and diatom assemblages , 2008, Journal of the North American Benthological Society.

[6]  J. Nelson,et al.  Changes in the Habitat and Fish Community of the Milwaukee River, Wisconsin, Following Removal of the Woolen Mills Dam , 1997 .

[7]  A. Heath Water Pollution and Fish Physiology , 1987 .

[8]  Brian S. Cade,et al.  Modeling Stream Fish Habitat Limitations from Wedge-Shaped Patterns of Variation in Standing Stock , 1996 .

[9]  R. Koenker,et al.  Goodness of Fit and Related Inference Processes for Quantile Regression , 1999 .

[10]  Pierre Legendre,et al.  Untangling Multiple Factors in Spatial Distributions: Lilies, Gophers, and Rocks , 1996 .

[11]  J. Lyons,et al.  Impacts of Urbanization on Stream Habitat and Fish Across Multiple Spatial Scales , 2001, Environmental management.

[12]  Robert J. Steedman,et al.  Modification and Assessment of an Index of Biotic Integrity to Quantify Stream Quality in Southern Ontario , 1988 .

[13]  B. Cade,et al.  Estimating effects of limiting factors with regression quantiles , 1999 .

[14]  A. N. Strahler DYNAMIC BASIS OF GEOMORPHOLOGY , 1952 .

[15]  D. Isermann,et al.  Recruitment Variation of Crappies in Response to Hydrology of Tennessee Reservoirs , 2002 .

[16]  Michael B. Griffith,et al.  Comparative application of indices of biotic integrity based on periphyton, macroinvertebrates, and fish to southern Rocky Mountain streams , 2005 .

[17]  E. Frimpong,et al.  Land-use Impacts on Watershed Health and Integrity in Indiana Warmwater Streams , 2009 .

[18]  Wayne S. Davis,et al.  Biological assessment and criteria : tools for water resource planning and decision making , 1995 .

[19]  E. Shtatland,et al.  THE PERILS OF STEPWISE LOGISTIC REGRESSION AND HOW TO ESCAPE THEM USING INFORMATION CRITERIA AND THE OUTPUT DELIVERY SYSTEM , 2001 .

[20]  H. Kaiser The Application of Electronic Computers to Factor Analysis , 1960 .

[21]  A. Zale,et al.  Development and Evaluation of a Fish Assemblage Index of Biotic Integrity for Northwestern Great Plains Streams , 2005 .

[22]  J. Karr Assessment of Biotic Integrity Using Fish Communities , 1981 .

[23]  N. Nagelkerke,et al.  A note on a general definition of the coefficient of determination , 1991 .

[24]  James R. Karr,et al.  Spatial and Temporal Variability of the Index of Biotic Integrity in Three Midwestern Streams , 1987 .

[25]  N A Obuchowski,et al.  Assessing physicians' accuracy in diagnosing paediatric patients with acute abdominal pain: measuring accuracy for multiple diseases , 2001, Statistics in medicine.

[26]  Glenn W Suter,et al.  A methodology for inferring the causes of observed impairments in aquatic ecosystems , 2002, Environmental toxicology and chemistry.

[27]  Justus von Liebig,et al.  Chemistry in Its Application to Agriculture and Physiology , 1842, London and Edinburgh Monthly Journal of Medical Science.

[28]  M. J. Maceina Simple application of using residuals from catch-curve regressions to assess year-class strength in fish , 1997 .

[29]  Jeffrey D. Ostermiller,et al.  Effects of sampling error on bioassessments of stream ecosystems: application to RIVPACS-type models , 2004, Journal of the North American Benthological Society.

[30]  C. Y. Peng,et al.  An Introduction to Logistic Regression Analysis and Reporting , 2002 .

[31]  Susan K. Jackson,et al.  The biological condition gradient: a descriptive model for interpreting change in aquatic ecosystems. , 2006, Ecological applications : a publication of the Ecological Society of America.

[32]  J. Michael Scott,et al.  Predicting Species Occurrences: Issues of Accuracy and Scale , 2002 .

[33]  J A Swets,et al.  Measuring the accuracy of diagnostic systems. , 1988, Science.

[34]  Philip W. Smith The fishes of Illinois , 1979 .

[35]  Torsten Hothorn,et al.  Classifying the biological condition of small streams: an example using benthic macroinvertebrates , 2009, Journal of the North American Benthological Society.

[36]  John R. Jones,et al.  Statistical Models for Limiting Nutrient Relations in Inland Waters , 1994 .

[37]  B. Cade,et al.  A gentle introduction to quantile regression for ecologists , 2003 .

[38]  C. P. Madenjian,et al.  Long-term changes of the Lake Michigan fish community following the reduction of exotic alewife (Alosa pseudoharengus) , 2006 .

[39]  William Adams,et al.  In Situ Methods of Measurement—An Important Line of Evidence in the Environmental Risk Framework , 2007, Integrated environmental assessment and management.

[40]  M. Barbour,et al.  Use of physical, chemical, and biological indices to assess impacts of contaminants and physical habitat alteration in urban streams , 2002, Environmental toxicology and chemistry.

[41]  W. Scott Overton,et al.  An EPA program for monitoring ecological status and trends , 1991, Environmental monitoring and assessment.

[42]  The Fishes of Ohio , 1958 .

[43]  A Local-Scale In Situ Approach for Stressor Identification of Biologically Impaired Aquatic Systems , 2006, Archives of environmental contamination and toxicology.

[44]  Paul Nguyen nonbinROC: Software for Evaluating Diagnostic Accuracies with Non-Binary Gold Standards , 2007 .

[45]  S. Gerking Key to the Fishes of Indiana , 1956 .

[46]  Bruce N Wilson,et al.  The Index of Biological Integrity and the bootstrap: Can random sampling error affect stream impairment decisions? , 2010 .

[47]  Glenn W Suter,et al.  Determining probable causes of ecological impairment in the Little Scioto River, Ohio, USA: Part 1. Listing candidate causes and analyzing evidence , 2002, Environmental toxicology and chemistry.

[48]  B. M. Weigel,et al.  Macroinvertebrate-based index of biotic integrity for protection of streams in west-central Mexico , 2002, Journal of the North American Benthological Society.

[49]  Nancy A Obuchowski,et al.  Estimating and comparing diagnostic tests' accuracy when the gold standard is not binary. , 2005, Academic radiology.