Dbp5p, a cytosolic RNA helicase, is required for poly(A)+ RNA export

The DBP5 gene encodes a putative RNA helicase of unknown function in the yeast Saccharomyces cerevisiae. It is shown here that Dbp5p is an ATP‐dependent RNA helicase required for polyadenylated [poly(A)+] RNA export. Surprisingly, Dbp5p is present predominantly, if not exclusively, in the cytoplasm, and is highly enriched around the nuclear envelope. This observation raises the possibility that Dbp5p may play a role in unloading or remodeling messenger RNA particles (mRNPs) upon arrival in the cytoplasm and in coupling mRNP export and translation. The functions of Dbp5p are likely to be conserved, since its potential homologues can be found in a variety of eukaryotic cells.

[1]  Deutsches Krebsforschungszentrum,et al.  Nucleocytoplasmic Transport , 1986, Springer Berlin Heidelberg.

[2]  C. Guthrie,et al.  Mechanical Devices of the Spliceosome: Motors, Clocks, Springs, and Things , 1998, Cell.

[3]  G. Blobel,et al.  A Distinct and Parallel Pathway for the Nuclear Import of an mRNA-binding Protein , 1997, The Journal of cell biology.

[4]  Michael R. Green,et al.  Compartmentalization of Eukaryotic Gene Expression: Causes and Effects , 1997, Cell.

[5]  Minoru Yoshida,et al.  CRM1 Is an Export Receptor for Leucine-Rich Nuclear Export Signals , 1997, Cell.

[6]  M. Powers,et al.  Nuclear Export Receptors: From Importin to Exportin , 1997, Cell.

[7]  Karsten Weis,et al.  Exportin 1 (Crm1p) Is an Essential Nuclear Export Factor , 1997, Cell.

[8]  B. Dujon,et al.  Two functionally distinct domains generated by in vivo cleavage of Nup145p: a novel biogenesis pathway for nucleoporins , 1997, The EMBO journal.

[9]  R. Lührmann,et al.  Mex67p, a novel factor for nuclear mRNA export, binds to both poly(A)+ RNA and nuclear pores , 1997, The EMBO journal.

[10]  Mark Ellisman,et al.  A cellular cofactor for the constitutive transport element of type D retrovirus. , 1997, Science.

[11]  G. Blobel,et al.  A Distinct Nuclear Import Pathway Used by Ribosomal Proteins , 1997, Cell.

[12]  Erich A. Nigg,et al.  Nucleocytoplasmic transport: signals, mechanisms and regulation , 1997, Nature.

[13]  R. Chuang,et al.  Requirement of the DEAD-Box Protein Ded1p for Messenger RNA Translation , 1997, Science.

[14]  B. Daneholt A Look at Messenger RNP Moving through the Nuclear Pore , 1997, Cell.

[15]  C. Sun,et al.  Dbp3p, a putative RNA helicase in Saccharomyces cerevisiae, is required for efficient pre-rRNA processing predominantly at site A3 , 1997, Molecular and cellular biology.

[16]  Paul Tempst,et al.  RSC, an Essential, Abundant Chromatin-Remodeling Complex , 1996, Cell.

[17]  R. Schneiter,et al.  A yeast acetyl coenzyme A carboxylase mutant links very-long-chain fatty acid synthesis to the structure and function of the nuclear membrane-pore complex , 1996, Molecular and cellular biology.

[18]  P. Silver,et al.  A GTPase Controlling Nuclear Trafficking: Running the Right Way or Walking RANdomly? , 1996, Cell.

[19]  R. Kraft,et al.  Importin Provides a Link between Nuclear Protein Import and U snRNA Export , 1996, Cell.

[20]  G. Dreyfuss,et al.  A Novel Receptor-Mediated Nuclear Protein Import Pathway , 1996, Cell.

[21]  Y. Liu,et al.  A DEAD-box-family protein is required for nucleocytoplasmic transport of yeast mRNA , 1996, Molecular and cellular biology.

[22]  P. Silver,et al.  Dynamic localization of the nuclear import receptor and its interactions with transport factors , 1996, The Journal of cell biology.

[23]  P. Silver,et al.  A protein that shuttles between the nucleus and the cytoplasm is an important mediator of RNA export. , 1996, Genes & development.

[24]  C. Higgins,et al.  A DEAD-box RNA helicase in the Escherichia coli RNA degradosome , 1996, Nature.

[25]  G. Blobel,et al.  Role of the Nuclear Transport Factor p10 in Nuclear Import , 1996, Science.

[26]  J. Hauber,et al.  Inhibition of HIV-1 Replication in Lymphocytes by Mutants of the Rev Cofactor eIF-5A , 1996, Science.

[27]  E. Kiseleva,et al.  A Pre-mRNA-Binding Protein Accompanies the RNA from the Gene through the Nuclear Pores and into Polysomes , 1996, Cell.

[28]  G. Dreyfuss,et al.  A nuclear export signal in hnRNP A1: A signal-mediated, temperature-dependent nuclear protein export pathway , 1995, Cell.

[29]  Joe D. Lewis,et al.  A cap-binding protein complex mediating U snRNA export , 1995, Nature.

[30]  L. Gerace,et al.  Nuclear export signals and the fast track to the cytoplasm , 1995, Cell.

[31]  E. Hurt,et al.  Nucleocytoplasmic transport: factors and mechanisms , 1995, FEBS letters.

[32]  E. Hurt,et al.  Genetic approaches to nuclear pore structure and function. , 1995, Trends in genetics : TIG.

[33]  C. Cole,et al.  A conditional allele of the novel repeat-containing yeast nucleoporin RAT7/NUP159 causes both rapid cessation of mRNA export and reversible clustering of nuclear pore complexes , 1995, The Journal of cell biology.

[34]  C. Peterson,et al.  The SWI-SNF complex: a chromatin remodeling machine? , 1995, Trends in biochemical sciences.

[35]  S. Chen,et al.  Nuclear mRNA accumulation causes nucleolar fragmentation in yeast mtr2 mutant. , 1994, Molecular biology of the cell.

[36]  M. Rout,et al.  Pores for thought: nuclear pore complex proteins. , 1994, Trends in cell biology.

[37]  F. Fuller-Pace,et al.  RNA helicases: modulators of RNA structure. , 1994, Trends in cell biology.

[38]  R. Schneiter,et al.  Isolation and characterization of Saccharomyces cerevisiae mRNA transport-defective (mtr) mutants , 1994 .

[39]  P. Lasko,et al.  Localization of vasa protein to the Drosophila pole plasm is independent of its RNA-binding and helicase activities. , 1994, Development.

[40]  D. L. Weeks,et al.  An3 mRNA encodes an RNA helicase that colocalizes with nucleoli in Xenopus oocytes in a stage-specific manner. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[41]  W. Boelens,et al.  Nuclear export of different classes of RNA is mediated by specific factors , 1994, The Journal of cell biology.

[42]  F. Melchior,et al.  Inhibition of nuclear protein import by nonhydrolyzable analogues of GTP and identification of the small GTPase Ran/TC4 as an essential transport factor [published erratum appears in J Cell Biol 1994 Jan;124(1-2):217] , 1993, The Journal of cell biology.

[43]  M. Swanson,et al.  PUB1 is a major nuclear and cytoplasmic polyadenylated RNA-binding protein in Saccharomyces cerevisiae , 1993, Molecular and cellular biology.

[44]  A. Sachs,et al.  Messenger RNA degradation in eukaryotes , 1993, Cell.

[45]  Eugene V. Koonin,et al.  Helicases: amino acid sequence comparisons and structure-function relationships , 1993 .

[46]  M. Aebi,et al.  Nuclear PRP20 protein is required for mRNA export. , 1993, The EMBO journal.

[47]  C. Guthrie,et al.  A conformational rearrangement in the spliceosome is dependent on PRP16 and ATP hydrolysis. , 1992, The EMBO journal.

[48]  P Linder,et al.  ATP hydrolysis by initiation factor 4A is required for translation initiation in Saccharomyces cerevisiae. , 1992, Proceedings of the National Academy of Sciences of the United States of America.

[49]  G. F. Joyce,et al.  Randomization of genes by PCR mutagenesis. , 1992, PCR methods and applications.

[50]  C. Cole,et al.  Isolation and characterization of RAT1: an essential gene of Saccharomyces cerevisiae required for the efficient nucleocytoplasmic trafficking of mRNA. , 1992, Genes & development.

[51]  J. Smith,et al.  The purified yeast pre‐mRNA splicing factor PRP2 is an RNA‐dependent NTPase. , 1992, The EMBO journal.

[52]  Y. Zhao,et al.  A conditional yeast mutant deficient in mRNA transport from nucleus to cytoplasm. , 1992, Proceedings of the National Academy of Sciences of the United States of America.

[53]  S. R. Schmid,et al.  Translation initiation factor 4A from Saccharomyces cerevisiae: analysis of residues conserved in the D-E-A-D family of RNA helicases , 1991, Molecular and cellular biology.

[54]  J. Abelson,et al.  Requirement of the RNA helicase-like protein PRP22 for release of messenger RNA from spliceosomes , 1991, Nature.

[55]  N. Sonenberg,et al.  Bidirectional RNA helicase activity of eucaryotic translation initiation factors 4A and 4F , 1990, Molecular and cellular biology.

[56]  J. Abelson,et al.  Identification of five putative yeast RNA helicase genes. , 1990, Proceedings of the National Academy of Sciences of the United States of America.

[57]  K. Cook,et al.  Specific binding of HIV-1 recombinant Rev protein to the Rev-responsive element in vitro , 1989, Nature.

[58]  Michael R. Green,et al.  Sequence-specific RNA binding by the HIV-1 Rev protein , 1989, Nature.

[59]  D. Tollervey,et al.  A yeast nucleolar protein related to mammalian fibrillarin is associated with small nucleolar RNA and is essential for viability. , 1989, The EMBO journal.

[60]  Ronald W. Davis,et al.  The poly(A) binding protein is required for poly(A) shortening and 60S ribosomal subunit-dependent translation initiation , 1989, Cell.

[61]  M. Scheffner,et al.  RNA helicase activity associated with the human p68 protein , 1989, Nature.

[62]  R. Sikorski,et al.  A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae. , 1989, Genetics.

[63]  R. Young,et al.  Eucaryotic RNA polymerase conditional mutant that rapidly ceases mRNA synthesis , 1987, Molecular and cellular biology.

[64]  G. Dreyfuss,et al.  Signal sequences that target nuclear import and nuclear export of pre-mRNA-binding proteins. , 1995, Cold Spring Harbor symposia on quantitative biology.

[65]  S. Chen,et al.  A yeast protein that bidirectionally affects nucleocytoplasmic transport. , 1995, Journal of cell science.

[66]  E. Izaurralde,et al.  RNA Export , 1995, Cell.

[67]  R. Sikorski,et al.  In vitro mutagenesis and plasmid shuffling: from cloned gene to mutant yeast. , 1991, Methods in enzymology.

[68]  J. Wise,et al.  Preparation and analysis of low molecular weight RNAs and small ribonucleoproteins. , 1991, Methods in enzymology.