GREAT: Gene Regulation EvAluation Tool
暂无分享,去创建一个
[1] J. R. Quinlan. Learning With Continuous Classes , 1992 .
[2] Carole A. Goble,et al. Investigating Semantic Similarity Measures Across the Gene Ontology: The Relationship Between Sequence and Annotation , 2003, Bioinform..
[3] Julio Collado-Vides,et al. RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation , 2007, Nucleic Acids Res..
[4] Catia Pesquita,et al. ProteInOn: A Web Tool for Protein Semantic Similarity , 2007 .
[5] J. Thevelein,et al. Osmotic Stress-Induced Gene Expression in Saccharomyces cerevisiae Requires Msn1p and the Novel Nuclear Factor Hot1p , 1999, Molecular and Cellular Biology.
[6] Ian H. Witten,et al. Induction of model trees for predicting continuous classes , 1996 .
[7] D. Rebholz-Schuhmann,et al. Facts from Text—Is Text Mining Ready to Deliver? , 2005, PLoS biology.
[8] M. Ashburner,et al. Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.
[9] Aidong Zhang,et al. Semantic integration to identify overlapping functional modules in protein interaction networks , 2007, BMC Bioinformatics.
[10] Christian Blaschke,et al. Identifying bioentity recognition errors of rule-based text-mining systems , 2008, 2008 Third International Conference on Digital Information Management.
[11] Meng Chen,et al. Multiple Basic Helix-Loop-Helix Proteins Regulate Expression of the ENO1 Gene of Saccharomyces cerevisiae , 2007, Eukaryotic Cell.
[12] Ibrahim Emam,et al. ArrayExpress update—from an archive of functional genomics experiments to the atlas of gene expression , 2008, Nucleic Acids Res..
[13] M. Stam,et al. Plant Methods BioMed Central Methodology Chromatin immunoprecipitation: optimization, quantitative , 2007 .
[14] Mário J. Silva,et al. Mining the BioLiterature: towards automatic annotation of genes and proteins , 2006 .
[15] Lars Juhl Jensen,et al. Large-scale extraction of gene regulation for model organisms in an ontological context , 2004, Silico Biol..
[16] Gregory D. Schuler,et al. Database resources of the National Center for Biotechnology Information , 2021, Nucleic Acids Res..
[17] A. Valencia,et al. Linking genes to literature: text mining, information extraction, and retrieval applications for biology , 2008, Genome Biology.
[18] O. Sheils,et al. Nucleic acid microarrays: an overview , 2003 .
[19] Leo Breiman,et al. Classification and Regression Trees , 1984 .
[20] Dietrich Rebholz-Schuhmann,et al. How Feasible and Robust is the Automatic Extraction of Gene Regulation Events? A Cross-Method Evaluation under Lab and Real-Life Conditions , 2009, BioNLP@HLT-NAACL.
[21] Phillip W. Lord,et al. Semantic Similarity in Biomedical Ontologies , 2009, PLoS Comput. Biol..
[22] Catia Pesquita,et al. Metrics for GO based protein semantic similarity: a systematic evaluation , 2008, BMC Bioinformatics.
[23] Pooja Jain,et al. The YEASTRACT database: a tool for the analysis of transcription regulatory associations in Saccharomyces cerevisiae , 2005, Nucleic Acids Res..
[24] Ron Edgar,et al. Gene Expression Omnibus ( GEO ) : Microarray data storage , submission , retrieval , and analysis , 2008 .
[25] Gregory D. Schuler,et al. Database resources of the National Center for Biotechnology Information: update , 2004, Nucleic acids research.
[26] M. Tyers,et al. From genomics to proteomics , 2003, Nature.
[27] Cátia Pesquita. Improving semantic similarity for proteins based on the gene ontology , 2007 .
[28] Robert C. Berwick,et al. Wordnet. an Electronic Lexical Database. Edited by Christiane Fellbaum, with a Preface By , 2003 .
[29] Philip Resnik,et al. Using Information Content to Evaluate Semantic Similarity in a Taxonomy , 1995, IJCAI.
[30] David Botstein,et al. SGD: Saccharomyces Genome Database , 1998, Nucleic Acids Res..
[31] Rachael P. Huntley,et al. The GOA database in 2009—an integrated Gene Ontology Annotation resource , 2008, Nucleic Acids Res..
[32] Ian H. Witten,et al. Data mining: practical machine learning tools and techniques, 3rd Edition , 1999 .
[33] Philip Resnik,et al. Semantic Similarity in a Taxonomy: An Information-Based Measure and its Application to Problems of Ambiguity in Natural Language , 1999, J. Artif. Intell. Res..
[34] Steven P. Abney. Partial parsing via finite-state cascades , 1996, Natural Language Engineering.