Is cooperative oxygen binding by hemoglobin really understood?

The enormous success of structural biology challenges the physical scientist. Can biophysical studies provide a truly deeper understanding of how a protein works than can be obtained from static structures and qualitative analysis of biochemical data? We address this question in a case study by presenting the key concepts and experimental results that have led to our current understanding of cooperative oxygen binding by hemoglobin, the paradigm of structure function relations in multisubunit proteins. We conclude that the underlying simplicity of the two-state allosteric mechanism could not have been demonstrated without novel physical experiments and a rigorous quantitative analysis.

[1]  C. Bohr Ueber den respiratorischen Stoffwechsel beim Embryo kaltblütiger Thiere1 , 1904 .

[2]  M Paoli,et al.  The stereochemical mechanism of the cooperative effects in hemoglobin revisited. , 1998, Annual review of biophysics and biomolecular structure.

[3]  D. P. Sun,et al.  Contribution of surface histidyl residues in the alpha-chain to the Bohr effect of human normal adult hemoglobin: roles of global electrostatic effects. , 1997, Biochemistry.

[4]  J. Edsall Hemoglobin and the origins of the concept of allosterism. , 1980, Federation proceedings.

[5]  E. Henry,et al.  Nanosecond absorption spectroscopy of hemoglobin: elementary processes in kinetic cooperativity. , 1983, Proceedings of the National Academy of Sciences of the United States of America.

[6]  J. Changeux,et al.  ON THE NATURE OF ALLOSTERIC TRANSITIONS: A PLAUSIBLE MODEL. , 1965, Journal of molecular biology.

[7]  A. Mozzarelli,et al.  T State Hemoglobin Binds Oxygen Noncooperatively with Allosteric Effects of Protons, Inositol Hexaphosphate, and Chloride* , 1997, The Journal of Biological Chemistry.

[8]  N. Shibayama,et al.  Asymmetric cyanomet valency hybrid hemoglobin, (alpha+CN-beta+CN-)(alpha beta): the issue of valency exchange. , 1998, Biochemistry.

[9]  M. Lim,et al.  Complex nonexponential relaxation in myoglobin after photodissociation of MbCO: measurement and analysis from 2 ps to 56 υs , 1994 .

[10]  M. Brunori,et al.  Enzyme Proteins. (Book Reviews: Hemoglobin and Myoglobin in Their Reactions with Ligands) , 1971 .

[11]  H Frauenfelder,et al.  Dynamics of ligand binding to myoglobin. , 1975, Biochemistry.

[12]  Max F. Perutz,et al.  Mechanisms of Cooperativity and Allosteric Regulation in Proteins , 1990 .

[13]  K. Imai The Monod-Wyman-Changeux allosteric model describes haemoglobin oxygenation with only one adjustable parameter. , 1983, Journal of molecular biology.

[14]  Marshall A. Lichtman,et al.  Commentary on and reprint of Pauling L, Itano HA, Singer SJ, Wells IC, Sickle cell anemia, a molecular disease, in Science (1949) 110:543–548 , 2000 .

[15]  J. Hopfield,et al.  CO binding to heme proteins: A model for barrier height distributions and slow conformational changes , 1983 .

[16]  Q H Gibson,et al.  Quaternary conformational changes in human hemoglobin studied by laser photolysis of carboxyhemoglobin. , 1976, The Journal of biological chemistry.

[17]  L. Pauling,et al.  The Oxygen Equilibrium of Hemoglobin and Its Structural Interpretation. , 1935, Proceedings of the National Academy of Sciences of the United States of America.

[18]  J. Hopfield,et al.  An allosteric model of hemoglobin. I. Kinetics. , 1971, Journal of molecular biology.

[19]  G. Adair A Critical Study of the Direct Method of Measuring the Osmotic Pressure of Haemoglobin , 1925 .

[20]  E. Henry,et al.  Application of linear free energy relations to protein conformational changes: the quaternary structural change of hemoglobin. , 1991, Proceedings of the National Academy of Sciences of the United States of America.

[21]  Edsall Jt Hemoglobin and the origins of the concept of allosterism. , 1980 .

[22]  J. Hofrichter,et al.  Sickle cell hemoglobin polymerization. , 1990, Advances in protein chemistry.

[23]  M. Brunori,et al.  Cooperative free energies for nested allosteric models as applied to human hemoglobin. , 1986, Biophysical Journal.

[24]  E. Henry,et al.  Allosteric effectors do not alter the oxygen affinity of hemoglobin crystals , 1997, Protein science : a publication of the Protein Society.

[25]  M. Doyle,et al.  Effects of NaCl on the linkages between O2 binding and subunit assembly in human hemoglobin: titration of the quaternary enhancement effect. , 1997, Biophysical chemistry.

[26]  S. W. Jones A Plausible Model , 1999 .

[27]  S. Edelstein Extensions of the Allosteric Model for Haemoglobin , 1971, Nature.

[28]  P. Wolynes,et al.  The energy landscapes and motions of proteins. , 1991, Science.

[29]  D. Koshland,et al.  Comparison of experimental binding data and theoretical models in proteins containing subunits. , 1966, Biochemistry.

[30]  G. K. Ackers,et al.  Experimental resolution of cooperative free energies for the ten ligation states of human hemoglobin. , 1985, Proceedings of the National Academy of Sciences of the United States of America.

[31]  S. Edelstein,et al.  Pairings and polarities of the 14 strands in sickle cell hemoglobin fibers. , 1987, Proceedings of the National Academy of Sciences of the United States of America.

[32]  A. Colosimo,et al.  What the intermediate compounds in ligand binding to hemoglobin tell about the mechanism of cooperativity. , 1990, Biophysical chemistry.

[33]  L. Pauling,et al.  Molecular disease. , 1959, The American journal of orthopsychiatry.

[34]  Christian Bohr,et al.  Ueber einen in biologischer Beziehung wichtigen Einfluss, den die Kohlensäurespannung des Blutes auf dessen Sauerstoffbindung übt1 , 1904 .

[35]  E. Henry,et al.  Oxygen binding by single crystals of hemoglobin. , 1993, Biochemistry.

[36]  R G Shulman,et al.  Allosteric interpretation of haemoglobin properties , 1975, Quarterly Reviews of Biophysics.

[37]  S. W. Jones,et al.  Commentary: a plausible model. , 1999, The Journal of general physiology.

[38]  M Karplus,et al.  A mathematical model for structure-function relations in hemoglobin. , 1972, Journal of molecular biology.

[39]  Q. Gibson The photochemical formation of a quickly reacting form of haemoglobin. , 1959, The Biochemical journal.

[40]  M. Perutz Stereochemistry of cooperative effects in haemoglobin. , 1970, Nature.

[41]  G. K. Ackers The energetics of ligand-linked subunit assembly in hemoglobin require a third allosteric structure. , 1990, Biophysical chemistry.

[42]  Richard Earl Dickerson,et al.  Hemoglobin : structure, function, evolution, and pathology , 1983 .

[43]  J. Hofrichter,et al.  Protein reaction kinetics in a room-temperature glass , 1995, Science.

[44]  N. Shibayama,et al.  Fixation of the quaternary structures of human adult haemoglobin by encapsulation in transparent porous silica gels. , 1995, Journal of molecular biology.

[45]  M. Perutz,et al.  Allosteric mechanism of haemoglobin: rupture of salt-bridges raises the oxygen affinity of the T-structure. , 1998, Journal of molecular biology.

[46]  Zygmunt Derewenda,et al.  Structure of the liganded T state of haemoglobin identifies the origin of cooperative oxygen binding , 1988, Nature.

[47]  G. K. Ackers,et al.  Deciphering the molecular code of hemoglobin allostery. , 1998, Advances in protein chemistry.

[48]  C. M. Jones,et al.  Can a two-state MWC allosteric model explain hemoglobin kinetics? , 1997, Biochemistry.

[49]  M. Doyle,et al.  The oxygen-binding intermediates of human hemoglobin: evaluation of their contributions to cooperativity using zinc-containing hybrids. , 1996, Biophysical journal.

[50]  L. Pauling,et al.  Sickle cell anemia a molecular disease. , 1949, Science.

[51]  H. Watson,et al.  STRUCTURE OF HAEMOGLOBIN. AN X-RAY EXAMINATION OF REDUCED HORSE HAEMOGLOBIN. , 1964, Nature.